Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 3.8e-249 864.4 432 100.0
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 4.1e-248 860.9 432 99.3
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 5.6e-245 850.5 432 98.1
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 7.3e-237 823.5 434 94.9
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 4.2e-232 807.7 432 92.1
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 2.1e-228 795.4 455 87.7
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 2.2e-209 732.3 433 85.5
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 2.3e-190 669.1 448 73.0
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 6.7e-190 667.5 435 74.9
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.1e-189 666.8 433 75.8
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.0e-189 666.0 433 74.6
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.7e-188 662.9 433 74.4
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 4.7e-183 644.8 440 72.3
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 4.7e-183 644.8 425 74.6
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.5e-181 639.8 431 71.2
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 3.3e-181 638.6 423 73.5
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 3.3e-181 638.6 437 72.1
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 4.4e-181 638.3 431 71.2
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 5.7e-181 637.9 419 74.5
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 7.5e-181 637.5 417 73.9
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 7.5e-181 637.5 419 74.5
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.8e-180 635.6 423 72.6
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 2.8e-180 635.6 433 71.4
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 1.8e-179 632.9 431 72.4
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 3.1e-179 632.1 449 71.0
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 4.1e-179 631.7 422 72.5
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 2.7e-178 629.0 421 72.7
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 4.5e-178 628.2 420 73.8
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 7.7e-178 627.5 435 70.8
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 1.7e-177 626.3 423 72.3
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 2.2e-177 625.9 453 68.2
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.8e-177 625.2 419 72.3
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 5.0e-177 624.8 423 72.1
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 3.2e-176 622.1 422 72.0
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 5.5e-176 621.3 430 69.3
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 6.1e-175 617.8 420 71.9
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 1.4e-174 616.7 423 69.0
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 1.4e-174 616.7 423 71.2
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 3.0e-174 615.5 420 71.2
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 6.8e-174 614.4 422 71.3
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 1.2e-173 613.6 430 69.8
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 3.4e-173 612.1 421 70.5
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 4.4e-173 611.7 423 70.2
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.3e-172 610.1 431 68.2
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 1.7e-172 609.8 431 68.7
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 1.7e-172 609.8 424 71.2
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 1.7e-172 609.8 424 71.2
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 6.3e-172 607.8 431 68.4
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 6.3e-172 607.8 423 70.2
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.4e-171 606.7 421 69.8
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 4.1e-171 605.1 422 69.2
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 5.4e-171 604.7 432 68.3
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 1.2e-170 603.6 432 67.8
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 3.5e-170 602.1 419 68.5
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 5.9e-170 601.3 419 70.9
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 1.3e-169 600.1 419 68.3
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 1.3e-169 600.1 424 69.1
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.3e-169 600.1 422 69.2
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 2.3e-169 599.4 423 68.6
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.9e-169 599.0 424 70.3
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 2.5e-168 595.9 424 69.8
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 3.3e-168 595.5 424 69.8
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 3.3e-168 595.5 434 68.0
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 4.2e-168 595.1 424 70.0
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 4.2e-168 595.1 421 67.9
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 4.2e-168 595.1 425 67.8
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 5.5e-168 594.7 424 69.8
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 5.5e-168 594.7 433 67.7
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 5.5e-168 594.7 419 69.5
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 7.2e-168 594.3 422 69.4
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 1.2e-167 593.6 419 70.2
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 2.8e-167 592.4 423 68.3
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 6.1e-167 591.3 434 67.5
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 8.0e-167 590.9 423 69.5
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 1.4e-166 590.1 423 68.6
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.4e-166 590.1 423 68.1
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 1.4e-166 590.1 423 68.6
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.8e-166 589.7 413 69.7
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 4.0e-166 588.6 420 66.9
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 5.2e-166 588.2 420 68.1
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 5.2e-166 588.2 420 68.1
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 1.5e-165 586.6 422 67.3
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 2.0e-165 586.3 482 62.4
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 4.4e-165 585.1 424 67.9
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 9.8e-165 583.9 421 67.2
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 9.8e-165 583.9 541 58.8
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 1.8e-163 579.7 419 65.4
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 2.4e-163 579.3 422 68.5
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 4.1e-163 578.6 424 65.8
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 3.5e-162 575.5 424 66.3
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 4.5e-162 575.1 435 67.8
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 2.5e-160 569.3 425 66.4
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 9.5e-160 567.4 425 66.1
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 1.2e-159 567.0 421 66.0
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.1e-158 562.4 421 65.3
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.4e-157 558.9 421 64.8
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.4e-157 558.5 421 65.1
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.3e-153 547.0 354 74.3
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 2.3e-153 546.2 427 63.2
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 4.3e-152 542.0 415 64.1
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 5.6e-152 541.6 419 60.6
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 2.8e-151 539.3 422 61.8
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 2.2e-140 503.1 431 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 1.0e-137 494.2 420 56.4
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 1.3e-137 493.8 434 59.7
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 1.3e-137 493.8 418 60.0
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 4.3e-136 488.8 335 71.9
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.8e-134 483.4 421 55.6
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 7.1e-131 471.5 423 54.4
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 5.8e-125 451.8 302 73.8
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 5.4e-123 445.3 353 64.6
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.9e-120 436.8 425 49.9
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 9.6e-120 434.5 271 77.5
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 4.5e-117 425.6 427 54.3
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 4.3e-112 409.1 265 74.7
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 1.4e-110 404.1 421 51.5
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.7e-84 317.4 198 77.8
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 8.5e-84 315.1 413 43.3
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 7.7e-77 292.0 235 58.7
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 2.3e-73 280.4 182 73.1
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 5.0e-68 262.7 291 50.9
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.3e-49 200.7 102 98.0
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 5.7e-48 196.1 136 69.1
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 2.6e-32 144.1 85 83.5
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.3e-28 131.7 90 65.6
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 2.3e-28 131.0 91 63.7
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 3.0e-12 77.4 362 22.9
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.1e-09 68.9 41 68.3
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 1.2e-08 65.5 91 42.9


User provided reference genes

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