Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 8.6e-105 383.6 191 100.0
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 2.2e-100 369.0 183 100.0
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 2.3e-94 349.0 183 96.2
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 2.3e-94 349.0 183 95.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 2.3e-86 322.4 183 88.0
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 8.9e-86 320.5 183 86.3
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 3.4e-85 318.5 185 87.0
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 1.1e-83 313.5 188 83.5
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 1.7e-81 306.2 188 81.4
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 4.0e-78 295.0 186 75.8
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 2.6e-77 292.4 186 74.2
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 4.4e-77 291.6 186 74.7
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 1.3e-76 290.0 186 75.8
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.3e-76 290.0 186 73.1
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 1.7e-76 289.7 181 79.0
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 3.8e-76 288.5 183 73.8
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 8.4e-76 287.3 186 73.7
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 1.4e-75 286.6 186 75.8
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.4e-75 286.6 185 74.1
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 1.9e-75 286.2 186 75.3
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 1.9e-75 286.2 181 75.7
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 1.9e-75 286.2 185 74.6
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.2e-75 285.4 186 73.1
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.2e-75 285.4 182 73.6
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.2e-75 285.4 186 72.6
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.2e-75 285.4 186 73.1
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 4.2e-75 285.0 182 73.6
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 4.2e-75 285.0 186 73.7
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 4.2e-75 285.0 185 74.6
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 7.1e-75 284.3 185 74.1
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 7.1e-75 284.3 186 72.0
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 9.3e-75 283.9 182 72.5
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 9.3e-75 283.9 186 74.2
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 1.2e-74 283.5 181 75.1
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 1.2e-74 283.5 184 75.0
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 1.6e-74 283.1 181 74.6
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.6e-74 283.1 187 73.3
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 2.1e-74 282.7 182 72.5
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 4.6e-74 281.6 186 72.0
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.0e-74 281.2 186 73.1
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 6.0e-74 281.2 186 70.4
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 6.0e-74 281.2 186 72.0
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 7.8e-74 280.8 180 77.2
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 7.8e-74 280.8 184 73.9
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.0e-73 280.4 186 73.1
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 1.7e-73 279.6 186 70.4
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 1.7e-73 279.6 165 78.8
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 3.0e-73 278.9 184 73.9
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.9e-73 278.5 186 73.1
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 6.6e-73 277.7 187 72.2
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 8.7e-73 277.3 185 71.9
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 1.1e-72 276.9 183 73.8
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 2.5e-72 275.8 188 70.7
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 7.3e-72 274.2 185 71.9
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 9.6e-72 273.9 181 71.8
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.3e-71 273.5 179 71.5
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 1.6e-71 273.1 169 78.1
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 3.6e-71 271.9 189 70.9
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 3.6e-71 271.9 183 68.9
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 6.2e-71 271.2 210 63.8
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.1e-70 270.4 210 63.3
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 2.4e-70 269.2 170 71.8
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 4.0e-70 268.5 186 72.6
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 5.3e-70 268.1 166 77.1
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 9.0e-70 267.3 184 72.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 1.5e-69 266.5 184 69.6
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 4.5e-69 265.0 172 74.4
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 4.5e-69 265.0 172 74.4
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 4.5e-69 265.0 172 74.4
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 4.5e-69 265.0 172 74.4
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 4.5e-69 265.0 172 74.4
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 5.8e-69 264.6 175 74.9
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 5.8e-69 264.6 181 72.4
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 7.6e-69 264.2 184 71.2
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 7.6e-69 264.2 189 68.3
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 9.9e-69 263.8 153 78.4
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 9.9e-69 263.8 186 70.4
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 1.3e-68 263.5 183 70.5
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 1.3e-68 263.5 186 70.4
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 2.2e-68 262.7 152 80.3
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 2.2e-68 262.7 171 72.5
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 3.8e-68 261.9 185 71.9
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 4.9e-68 261.5 172 73.3
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 4.9e-68 261.5 183 66.7
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 4.9e-68 261.5 210 62.4
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.9e-68 261.5 188 68.6
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 8.4e-68 260.8 179 69.8
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 1.4e-67 260.0 153 77.8
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 2.4e-67 259.2 162 75.9
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 3.2e-67 258.8 175 72.6
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 4.2e-67 258.5 203 65.5
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 4.2e-67 258.5 184 69.0
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 7.1e-67 257.7 187 67.9
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 9.3e-67 257.3 184 69.0
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 9.3e-67 257.3 181 68.0
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 2.7e-66 255.8 165 72.7
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 2.7e-66 255.8 161 74.5
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 6.0e-66 254.6 186 68.8
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 1.3e-65 253.4 161 73.3
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 1.8e-65 253.1 175 71.4
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.8e-65 253.1 181 70.2
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.1e-64 250.4 186 65.6
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 1.1e-64 250.4 160 73.8
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 3.3e-64 248.8 161 73.9
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.3e-64 248.8 162 72.8
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.3e-64 248.8 162 72.8
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 3.3e-64 248.8 161 72.0
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 5.6e-64 248.1 161 72.7
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 1.3e-63 246.9 161 71.4
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.8e-62 243.0 186 64.0
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 2.4e-62 242.7 168 68.5
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 3.1e-62 242.3 160 70.6
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 3.1e-62 242.3 160 70.6
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 3.1e-62 242.3 160 70.6
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 4.0e-62 241.9 160 71.2
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.5e-61 240.0 147 75.5
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 2.0e-61 239.6 161 68.9
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 9.9e-61 237.3 184 63.0
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 1.7e-60 236.5 181 66.9
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 1.9e-56 223.0 153 68.6
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 1.3e-55 220.3 163 66.9
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 4.0e-54 215.3 153 67.3
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 1.2e-53 213.8 175 62.9
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 7.1e-51 204.5 156 60.9
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.6e-47 193.4 181 58.0
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 6.3e-47 191.4 125 75.2
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.8e-44 182.2 184 54.9
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 7.2e-43 177.9 140 62.9
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 1.0e-41 174.1 166 51.2
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 2.3e-41 172.9 153 57.5
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 4.3e-40 168.7 164 52.4
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.3e-36 157.1 110 69.1
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 2.2e-36 156.4 109 69.7
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 3.2e-35 152.5 142 52.1
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 7.2e-35 151.4 152 47.4
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 4.8e-31 138.7 176 46.0
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.1e-30 137.5 88 72.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 4.1e-30 135.6 74 83.8
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 1.7e-28 130.2 78 79.5
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.9e-27 126.7 108 62.0
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 6.7e-25 118.2 74 73.0
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 8.8e-25 117.9 80 67.5
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 6.7e-17 91.7 70 60.0
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 1.5e-16 90.5 55 78.2
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 9.4e-11 71.2 107 40.2
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 4.0e-09 65.9 45 64.4
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 3.4e-08 62.8 72 41.7
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 6.3e-07 58.5 57 57.9
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 2.4e-06 56.6 41 63.4


User provided reference genes

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