Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 0.0e+00 3363.9 1882 100.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 0.0e+00 2598.5 1547 94.6
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 0.0e+00 2483.0 1565 88.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 2088.2 1999 66.0
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 2085.1 2198 62.1
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 0.0e+00 1820.8 2082 59.4
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.2e-187 661.4 2169 34.1
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 2.4e-186 657.9 1998 36.1
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.7e-184 651.7 1821 36.4
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 5.3e-178 630.2 1964 34.3
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.6e-172 611.3 1946 34.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.4e-172 610.5 2016 33.9
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.4e-170 605.5 2089 34.8
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 4.2e-167 594.0 1928 33.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 4.7e-166 590.5 1972 33.1
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.8e-165 588.6 1672 35.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.4e-164 584.3 751 54.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 6.3e-163 580.1 1990 33.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.0e-157 562.8 2083 33.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 8.9e-157 559.7 736 53.8
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 4.9e-155 553.9 2060 32.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.3e-155 553.5 2103 32.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 4.5e-153 547.4 2080 32.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-151 542.7 862 46.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-151 542.7 2052 32.8
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.9e-151 542.0 867 46.3
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.8e-149 535.4 1892 32.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.6e-148 531.6 2084 31.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.9e-147 528.1 1872 32.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.9e-147 527.3 2111 32.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.4e-146 523.9 811 47.5
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.0e-144 519.6 1998 32.6
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.7e-144 518.8 1786 33.1
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.3e-144 518.5 1852 32.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 6.6e-144 516.9 1964 32.1
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-143 516.2 1840 32.0
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-143 516.2 1997 32.0
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.8e-141 506.9 758 49.5
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.9e-138 498.8 2133 31.5
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.2e-137 496.1 902 43.7
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.7e-137 495.0 2147 30.7
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.7e-136 492.3 2151 29.1
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.7e-136 492.3 981 44.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 3.9e-136 491.1 2011 31.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.9e-136 491.1 907 43.2
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.1e-136 490.7 904 45.6
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 8.6e-136 490.0 888 44.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.3e-135 487.6 1898 32.2
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.8e-134 485.0 1940 32.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.7e-134 484.2 1851 32.0
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 3.1e-133 481.5 885 45.9
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 4.4e-132 477.6 2057 31.3
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.3e-131 476.1 1858 31.6
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.7e-131 475.7 771 48.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 2.9e-131 474.9 1742 33.1
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.4e-130 472.6 868 44.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.6e-129 467.6 1885 31.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.0e-128 466.5 1921 30.8
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.9e-128 464.5 874 43.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 6.8e-125 453.8 1928 30.3
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.7e-123 449.1 478 60.9
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.9e-123 448.4 769 45.0
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 5.4e-122 444.1 2032 30.1
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 7.8e-121 440.3 2024 30.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.9e-119 435.6 2001 29.7
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 7.3e-119 433.7 1959 31.2
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 7.3e-119 433.7 873 42.3
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.4e-117 428.7 1928 29.3
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.4e-116 424.9 1065 38.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 4.4e-116 424.5 763 44.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.7e-115 422.5 788 44.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 6.4e-115 420.6 1774 31.2
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 8.4e-115 420.2 1874 31.1
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.0e-112 413.3 821 40.2
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.3e-112 412.9 1847 32.1
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.7e-112 412.5 2076 29.5
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 5.6e-111 407.5 2011 32.6
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.8e-110 404.4 1881 30.3
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.8e-109 402.5 1934 30.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 4.0e-109 401.4 1794 31.2
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.3e-107 396.4 788 41.6
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-107 396.4 493 57.6
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.7e-107 396.0 855 39.1
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 3.8e-107 394.8 1710 29.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.4e-106 392.9 770 41.4
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.4e-106 392.1 476 53.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.2e-106 391.7 789 41.6
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 9.3e-106 390.2 1925 29.2
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 2.1e-105 389.0 1930 29.1
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.0e-104 385.2 846 41.0
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.9e-103 382.5 1778 29.5
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 4.8e-102 377.9 794 42.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.3e-99 369.8 810 41.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.2e-98 365.2 2208 28.8
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.1e-97 362.5 732 42.3
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.0e-96 360.1 506 46.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.9e-96 358.2 643 39.5
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.4e-95 354.0 764 36.5
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.8e-94 352.1 835 38.7
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.5e-90 337.8 824 38.7
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 7.9e-89 334.0 1266 31.0
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.3e-88 332.4 704 41.3
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.3e-88 332.4 2090 28.5
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 6.7e-88 330.9 899 35.6
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 6.9e-85 320.9 638 38.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 4.5e-84 318.2 159 96.2
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.2e-82 312.0 589 43.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.7e-78 298.5 766 38.3
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.9e-75 288.9 1678 28.1
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.2e-70 270.8 538 37.0
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 8.5e-67 260.8 523 44.0
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.1e-66 260.4 329 56.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.8e-61 243.0 278 60.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.4e-61 242.7 254 52.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 6.1e-57 228.0 1730 25.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 7.5e-55 221.1 700 34.9
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.9e-51 209.1 337 45.4
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 7.0e-45 188.0 707 33.5
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.2e-36 160.6 205 45.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 4.3e-34 152.1 858 25.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.7e-33 148.7 1534 25.0
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.0e-31 143.3 214 55.1
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 8.3e-30 137.9 109 63.3
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.1e-29 137.5 164 48.2
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 3.5e-28 132.5 218 37.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.1e-26 127.5 99 66.7
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 8.0e-25 121.3 321 36.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 4.7e-17 95.5 231 32.9
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.2e-16 92.0 95 52.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.2e-15 90.9 133 42.1
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.4e-15 89.4 1335 24.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 5.8e-15 88.6 95 62.1
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.6e-12 80.5 403 30.5
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.3e-11 76.6 155 33.5
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 3.3e-10 72.8 159 32.1
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-08 67.4 190 36.8
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 3.1e-08 66.2 128 40.6


User provided reference genes

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