Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022610 Solanum pennellii HOM05D001240 ORTHO05D037679 6.5e-48 193.7 99 100.0
Sopen11g008390 Solanum pennellii HOM05D001240 ORTHO05D002450 1.3e-40 169.5 93 91.4
Solyc11g013370.3 Solanum lycopersicum HOM05D001240 ORTHO05D002450 5.0e-40 167.5 93 90.3
CAN.G255.1 Capsicum annuum HOM05D001240 ORTHO05D002450 1.0e-32 143.3 93 78.5
Nitab4.5_0009626g0010 Nicotiana tabacum HOM05D001240 ORTHO05D002450 1.0e-32 143.3 93 76.3
Nitab4.5_0000051g0250 Nicotiana tabacum HOM05D001240 ORTHO05D002450 2.5e-31 138.7 93 74.2
Peaxi162Scf00018g00311 Petunia axillaris HOM05D001240 ORTHO05D002450 4.0e-29 131.3 93 71.0
Lj9A560G41 Lonicera japonica HOM05D001240 ORTHO05D002450 3.2e-18 95.1 90 52.2
Dinv02630 Davidia involucrata HOM05D001240 ORTHO05D002450 1.2e-17 93.2 90 52.2
Solyc05g016715.1 Solanum lycopersicum HOM05D001240 ORTHO05D037679 1.2e-17 93.2 50 94.0
Actinidia12166 Actinidia chinensis HOM05D001240 ORTHO05D002450 2.7e-17 92.0 95 53.7
Sabra02G0110200 Salix brachista HOM05D001240 ORTHO05D002450 1.3e-16 89.7 90 51.1
AUR62013696 Chenopodium quinoa HOM05D001240 ORTHO05D002450 6.6e-16 87.4 89 53.9
Potri.002G141300 Populus trichocarpa HOM05D001240 ORTHO05D002450 6.6e-16 87.4 90 50.0
EL10Ac1g00804 Beta vulgaris HOM05D001240 ORTHO05D002450 8.6e-16 87.0 90 53.3
QL04p034731 Quercus lobata HOM05D001240 ORTHO05D002450 1.1e-15 86.7 90 51.1
Hund17072 Selenicereus undatus HOM05D001240 ORTHO05D002450 1.1e-15 86.7 88 52.3
GSVIVG01018223001 Vitis vinifera HOM05D001240 ORTHO05D002450 1.1e-15 86.7 82 54.9
TAR375G0817 Trochodendron aralioides HOM05D001240 ORTHO05D002450 1.5e-15 86.3 85 51.8
AUR62004133 Chenopodium quinoa HOM05D001240 ORTHO05D002450 2.5e-15 85.5 89 51.7
Gohir.D08G159100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 4.3e-15 84.7 90 51.1
Rhsim07G0033400 Rhododendron simsii HOM05D001240 ORTHO05D002450 4.3e-15 84.7 85 50.6
Thecc.01G388000 Theobroma cacao HOM05D001240 ORTHO05D002450 4.3e-15 84.7 90 50.0
TWI23G0115 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 4.3e-15 84.7 90 48.9
Cfa011114 Carpinus fangiana HOM05D001240 ORTHO05D002450 7.3e-15 84.0 89 50.6
Gorai.004G165100 Gossypium raimondii HOM05D001240 ORTHO05D002450 7.3e-15 84.0 90 50.0
Duzib138G0437 Durio zibethinus HOM05D001240 ORTHO05D002450 1.2e-14 83.2 90 52.2
Sc25g0000760 Simmondsia chinensis HOM05D001240 ORTHO05D002450 1.2e-14 83.2 90 48.9
TWI59G0329 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 2.1e-14 82.4 92 47.8
TAR374G1704 Trochodendron aralioides HOM05D001240 ORTHO05D002450 2.1e-14 82.4 85 50.6
CiPaw.14G023600 Carya illinoinensis HOM05D001240 ORTHO05D002450 2.8e-14 82.0 89 49.4
Cpa.g.sc101.41 Carica papaya HOM05D001240 ORTHO05D002450 4.7e-14 81.3 92 45.7
vmacro13473 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 4.7e-14 81.3 89 48.3
Haze_02752 Corylus avellana HOM05D001240 ORTHO05D002450 8.1e-14 80.5 89 50.6
Lj1g0014311 Lotus japonicus HOM05D001240 ORTHO05D002450 8.1e-14 80.5 90 50.0
Potri.014G055800 Populus trichocarpa HOM05D001240 ORTHO05D002450 8.1e-14 80.5 90 47.8
PSO170G3933 Papaver somniferum HOM05D001240 ORTHO05D002450 1.1e-13 80.1 85 45.9
CANSAT21G1530 Cannabis sativa HOM05D001240 ORTHO05D002450 1.8e-13 79.3 90 48.9
Gohir.D11G081500 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.8e-13 79.3 90 50.0
PSO017G0984 Papaver somniferum HOM05D001240 ORTHO05D002450 2.3e-13 79.0 85 45.9
Gorai.007G087200 Gossypium raimondii HOM05D001240 ORTHO05D002450 3.1e-13 78.6 90 48.9
Gohir.A11G077100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 5.2e-13 77.8 90 48.9
arahy.Tifrunner.gnm1.ann1.J7EN8P Arachis hypogaea HOM05D001240 ORTHO05D002450 1.2e-12 76.6 93 48.4
MD07G1098900 Malus domestica HOM05D001240 ORTHO05D002450 1.2e-12 76.6 90 46.7
Ah.05g173400 Amaranthus hybridus HOM05D001240 ORTHO05D002450 1.5e-12 76.3 90 46.7
Gohir.A08G029900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.0e-12 75.9 89 50.6
Gohir.D08G040700 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.0e-12 75.9 89 50.6
arahy.Tifrunner.gnm1.ann1.PNMP4P Arachis hypogaea HOM05D001240 ORTHO05D002450 3.4e-12 75.1 97 47.4
Gorai.004G039600 Gossypium raimondii HOM05D001240 ORTHO05D002450 3.4e-12 75.1 85 51.8
CiPaw.13G029600 Carya illinoinensis HOM05D001240 ORTHO05D002450 4.4e-12 74.7 89 46.1
Gohir.A08G137833 Gossypium hirsutum HOM05D001240 ORTHO05D002450 5.8e-12 74.3 90 47.8
Oeu063219.1 Olea europaea HOM05D001240 ORTHO05D002450 5.8e-12 74.3 93 41.9
MSTRG.17144 Avicennia marina HOM05D001240 ORTHO05D002450 7.5e-12 73.9 90 44.4
Duzib133G0682 Durio zibethinus HOM05D001240 ORTHO05D002450 7.5e-12 73.9 90 45.6
Medtr7g046250 Medicago truncatula HOM05D001240 ORTHO05D002450 1.3e-11 73.2 90 45.6
Sopen02g016010 Solanum pennellii HOM05D001240 ORTHO05D037679 1.3e-11 73.2 38 94.7
Eucgr.E02757 Eucalyptus grandis HOM05D001240 ORTHO05D002450 1.7e-11 72.8 91 44.0
Nn1g00928 Nelumbo nucifera HOM05D001240 ORTHO05D002450 1.7e-11 72.8 83 47.0
Ca_07362_v3 Cicer arietinum L. HOM05D001240 ORTHO05D002450 2.2e-11 72.4 90 45.6
Prupe.2G122900 Prunus persica HOM05D001240 ORTHO05D002450 2.2e-11 72.4 90 42.2
VMungo1383G0153 Vigna mungo HOM05D001240 ORTHO05D002450 2.2e-11 72.4 90 46.7
Atru.chr5.188 Acer truncatum HOM05D001240 ORTHO05D002450 2.9e-11 72.0 89 47.2
SGA_v2.0_scaffold153G36935 Striga asiatica HOM05D001240 ORTHO05D002450 2.9e-11 72.0 91 46.2
Psat3g180600 Pisum sativum HOM05D001240 ORTHO05D002450 3.7e-11 71.6 90 45.6
Cc02_g24800 Coffea canephora HOM05D001240 ORTHO05D002450 6.4e-11 70.9 91 40.7
Glyma.01G074000 Glycine max HOM05D001240 ORTHO05D002450 6.4e-11 70.9 90 46.7
HanXRQChr05g0138451 Helianthus annuus HOM05D001240 ORTHO05D002450 6.4e-11 70.9 95 42.1
Aqoxy7G00824 Aquilegia oxysepala HOM05D001240 ORTHO05D002450 8.3e-11 70.5 89 42.7
Manes.01G271200 Manihot esculenta HOM05D001240 ORTHO05D002450 8.3e-11 70.5 90 43.3
SGA_v2.0_scaffold52G19205 Striga asiatica HOM05D001240 ORTHO05D003764 8.3e-11 70.5 90 44.4
COL.COLO4_12451 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.1e-10 70.1 90 47.8
Lsat_1_v5_gn_4_43721 Lactuca sativa HOM05D001240 ORTHO05D002450 1.4e-10 69.7 89 46.1
Oeu061502.1 Olea europaea HOM05D001240 ORTHO05D002450 1.9e-10 69.3 92 42.4
TPR.G39045 Trifolium pratense HOM05D001240 ORTHO05D002450 1.9e-10 69.3 93 43.0
Glyma.11G175700 Glycine max HOM05D001240 ORTHO05D002450 3.2e-10 68.6 90 45.6
CDE11G1177 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 5.4e-10 67.8 88 43.2
Ciclev10018789m.g Citrus clementina HOM05D001240 ORTHO05D002450 5.4e-10 67.8 85 47.1
MBI04_g09531_MAGBIO Magnolia biondii HOM05D001240 ORTHO05D002450 7.1e-10 67.4 87 41.4
PGR004G1996 Punica granatum HOM05D001240 ORTHO05D002450 7.1e-10 67.4 89 42.7
RcHm_v2.0_Chr1g0346311 Rosa chinensis HOM05D001240 ORTHO05D002450 1.2e-09 66.6 90 42.2
Sabra14G0041000 Salix brachista HOM05D001240 ORTHO05D002450 1.6e-09 66.2 122 36.9
ECA234G2180 Erigeron canadensis HOM05D001240 ORTHO05D002450 2.7e-09 65.5 89 43.8
FAN10G2665 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.7e-09 65.5 90 41.1
ATR0057G002 Amborella trichopoda HOM05D001240 ORTHO05D002450 3.5e-09 65.1 88 38.6
Lalb_Chr19g0126661 Lupinus albus HOM05D001240 ORTHO05D002450 3.5e-09 65.1 90 45.6
FAN01G0771 Fragaria x ananassa HOM05D001240 ORTHO05D002450 4.6e-09 64.7 89 40.4
DCAR_015857 Daucus carota HOM05D001240 ORTHO05D002450 7.8e-09 63.9 89 41.6
Manes.05G051900 Manihot esculenta HOM05D001240 ORTHO05D002450 1.7e-08 62.8 90 44.4
CDE09G0073 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 2.3e-08 62.4 88 39.8
MD02G1218200 Malus domestica HOM05D001240 ORTHO05D002450 3.0e-08 62.0 89 39.3
Lalb_Chr03g0040151 Lupinus albus HOM05D001240 ORTHO05D002450 5.1e-08 61.2 90 43.3
Migut.B01559 Erythranthe guttata HOM05D001240 ORTHO05D002450 6.6e-08 60.8 96 39.6
FvH4_7g09510 Fragaria vesca HOM05D001240 ORTHO05D002450 6.6e-08 60.8 90 40.0
FAN06G3317 Fragaria x ananassa HOM05D001240 ORTHO05D002450 6.6e-08 60.8 90 40.0
FAN10G1201 Fragaria x ananassa HOM05D001240 ORTHO05D002450 1.1e-07 60.1 90 40.0
FAN06G2617 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.5e-07 58.9 90 38.9
THA.LOC104817201 Tarenaya hassleriana HOM05D001240 ORTHO05D002450 1.2e-06 56.6 88 38.6
MELO3C005971.2 Cucumis melo HOM05D001240 ORTHO05D002450 2.1e-06 55.8 89 36.0
HPP92_015119 Vanilla planifolia HOM05D001240 ORTHO05D002450 2.1e-06 55.8 92 35.9
FAN03G0248 Fragaria x ananassa HOM05D001240 ORTHO05D002450 2.8e-06 55.5 89 38.2
Aa31LG1G26550 Aethionema arabicum HOM05D001240 ORTHO05D002450 6.2e-06 54.3 89 30.3
CsaV3_3G007480 Cucumis sativus L. HOM05D001240 ORTHO05D002450 6.2e-06 54.3 89 34.8
SHI13595 Sapria himalayana HOM05D001240 ORTHO05D002450 6.2e-06 54.3 85 36.5


User provided reference genes

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