Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g020940 Solanum pennellii HOM05D002178 ORTHO05D002373 3.0e-35 151.4 79 100.0
CAN.G798.42 Capsicum annuum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Nitab4.5_0000548g0170 Nicotiana tabacum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Nitab4.5_0007913g0030 Nicotiana tabacum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Nitab4.5_0009812g0040 Nicotiana tabacum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Solyc01g103800.3 Solanum lycopersicum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Sopen01g046200 Solanum pennellii HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
PGSC0003DMG400024929 Solanum tuberosum HOM05D002178 ORTHO05D002373 1.4e-08 62.8 40 80.0
Medtr5g012890 Medicago truncatula HOM05D002178 ORTHO05D002373 1.8e-08 62.4 40 77.5
Psat2g176680 Pisum sativum HOM05D002178 ORTHO05D002373 1.8e-08 62.4 40 77.5
Nitab4.5_0000948g0170 Nicotiana tabacum HOM05D002178 ORTHO05D002373 3.1e-08 61.6 40 77.5
Nitab4.5_0002591g0080 Nicotiana tabacum HOM05D002178 ORTHO05D002373 3.1e-08 61.6 40 77.5
Solyc03g083290.4 Solanum lycopersicum HOM05D002178 ORTHO05D002373 3.1e-08 61.6 40 77.5
Sopen03g023040 Solanum pennellii HOM05D002178 ORTHO05D002373 3.1e-08 61.6 40 77.5
Ca_24590_v3 Cicer arietinum L. HOM05D002178 ORTHO05D002373 4.0e-08 61.2 40 75.0
Glyma.08G217700 Glycine max HOM05D002178 ORTHO05D002373 5.3e-08 60.8 40 77.5
Glyma.13G369700 Glycine max HOM05D002178 ORTHO05D002373 5.3e-08 60.8 40 77.5
Glyma.15G003700 Glycine max HOM05D002178 ORTHO05D002373 5.3e-08 60.8 40 77.5
Lj3g0009201 Lotus japonicus HOM05D002178 ORTHO05D002373 5.3e-08 60.8 40 77.5
Lj3g0011667 Lotus japonicus HOM05D002178 ORTHO05D002373 5.3e-08 60.8 40 75.0
Nitab4.5_0001271g0070 Nicotiana tabacum HOM05D002178 ORTHO05D002373 6.9e-08 60.5 40 75.0
Nitab4.5_0001340g0070 Nicotiana tabacum HOM05D002178 ORTHO05D002373 6.9e-08 60.5 40 75.0
PGSC0003DMG400009128 Solanum tuberosum HOM05D002178 ORTHO05D002373 6.9e-08 60.5 40 75.0
CiPaw.01G254000 Carya illinoinensis HOM05D002178 ORTHO05D002373 9.0e-08 60.1 40 77.5
CiPaw.02G161600 Carya illinoinensis HOM05D002178 ORTHO05D002373 9.0e-08 60.1 40 77.5
Cc04_g05020 Coffea canephora HOM05D002178 ORTHO05D002373 9.0e-08 60.1 40 77.5
Haze_16658 Corylus avellana HOM05D002178 ORTHO05D002373 9.0e-08 60.1 40 77.5
Glyma.07G023900 Glycine max HOM05D002178 ORTHO05D002373 1.2e-07 59.7 40 75.0
QL02p092742 Quercus lobata HOM05D002178 ORTHO05D002373 1.2e-07 59.7 40 77.5
TPR.G18115 Trifolium pratense HOM05D002178 ORTHO05D002373 1.2e-07 59.7 40 72.5
Ca_20533_v3 Cicer arietinum L. HOM05D002178 ORTHO05D002373 1.5e-07 59.3 40 75.0
Ca_20549_v3 Cicer arietinum L. HOM05D002178 ORTHO05D002373 1.5e-07 59.3 40 75.0
Psat7g259480 Pisum sativum HOM05D002178 ORTHO05D002373 1.5e-07 59.3 40 75.0
TPR.G38791 Trifolium pratense HOM05D002178 ORTHO05D002373 1.5e-07 59.3 40 75.0
TWI59G1232 Tripterygium wilfordii HOM05D002178 ORTHO05D002373 1.5e-07 59.3 40 75.0
Ca_17634_v3 Cicer arietinum L. HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 72.5
Dinv21404 Davidia involucrata HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 75.0
Lalb_Chr01g0012091 Lupinus albus HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 75.0
Lalb_Chr12g0197361 Lupinus albus HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 75.0
Lalb_Chr25g0278921 Lupinus albus HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 75.0
Medtr8g093770 Medicago truncatula HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 72.5
Nitab4.5_0002591g0090 Nicotiana tabacum HOM05D002178 ORTHO05D282483 2.0e-07 58.9 40 75.0
Psat7g045920 Pisum sativum HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 72.5
QL05p035455 Quercus lobata HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 75.0
TPR.G37329 Trifolium pratense HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 72.5
TWI23G0608 Tripterygium wilfordii HOM05D002178 ORTHO05D002373 2.0e-07 58.9 40 72.5
CSS0000337 Camellia sinensis var. sinensis HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
CSS0019557 Camellia sinensis var. sinensis HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
CSS0026119 Camellia sinensis var. sinensis HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
CAN.G47.10 Capsicum annuum HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
DCAR_020879 Daucus carota HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
Lj4P831T20 Lonicera japonica HOM05D002178 ORTHO05D002373 2.6e-07 58.5 39 76.9
Lj5C79T7 Lonicera japonica HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
Nn2g15470 Nelumbo nucifera HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 72.5
Phvul.010G160500 Phaseolus vulgaris HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
SGA_v2.0_scaffold5G02775 Striga asiatica HOM05D002178 ORTHO05D002373 2.6e-07 58.5 40 75.0
Ciclev10026727m.g Citrus clementina HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Peaxi162Scf00011g00818 Petunia axillaris HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Phvul.005G182200 Phaseolus vulgaris HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Potri.002G056200 Populus trichocarpa HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Prupe.7G260600 Prunus persica HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Sabra02G0045500 Salix brachista HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Sabra05G0156900 Salix brachista HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Sc10g0008300 Simmondsia chinensis HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Sc10g0008310 Simmondsia chinensis HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Solyc12g042650.2 Solanum lycopersicum HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Sopen12g021800 Solanum pennellii HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
PGSC0003DMG400028631 Solanum tuberosum HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
VMungo1080G1734 Vigna mungo HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
VMungo1215G1204 Vigna mungo HOM05D002178 ORTHO05D002373 3.4e-07 58.2 40 72.5
Cpa.g.sc462.2 Carica papaya HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 75.0
Cpa.g.sc462.3 Carica papaya HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 75.0
CiPaw.16G114700 Carya illinoinensis HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 75.0
Dinv23292 Davidia involucrata HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 75.0
Lj9P494T42 Lonicera japonica HOM05D002178 ORTHO05D002373 4.5e-07 57.8 39 74.4
MD02G1009500 Malus domestica HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
MD15G1154900 Malus domestica HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
MD15G1155000 Malus domestica HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
Manes.04G103600 Manihot esculenta HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
Manes.11G065300 Manihot esculenta HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
Nn8g39826 Nelumbo nucifera HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
unitig_699.g19852 Utricularia gibba HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 70.0
GSVIVG01023591001 Vitis vinifera HOM05D002178 ORTHO05D002373 4.5e-07 57.8 40 72.5
Actinidia18242 Actinidia chinensis HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
Actinidia25460 Actinidia chinensis HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
Actinidia36883 Actinidia chinensis HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
DCAR_016298 Daucus carota HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
Nn2g12321 Nelumbo nucifera HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
Oeu060127.1 Olea europaea HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 75.0
GSVIVG01034219001 Vitis vinifera HOM05D002178 ORTHO05D002373 5.8e-07 57.4 40 72.5
MSTRG.22793 Avicennia marina HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 70.0
Cfa017978 Carpinus fangiana HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 72.5
Haze_19230 Corylus avellana HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 72.5
Dinv41394 Davidia involucrata HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 72.5
Lalb_Chr04g0264411 Lupinus albus HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 75.0
Potri.005G206300 Populus trichocarpa HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 70.0
Hund00439 Selenicereus undatus HOM05D002178 ORTHO05D002373 7.6e-07 57.0 40 70.0
DCAR_019380 Daucus carota HOM05D002178 ORTHO05D002373 9.9e-07 56.6 40 72.5
Medtr4g006830 Medicago truncatula HOM05D002178 ORTHO05D002373 9.9e-07 56.6 40 72.5
Potri.001G046600 Populus trichocarpa HOM05D002178 ORTHO05D002373 9.9e-07 56.6 49 63.3
Potri.003G181200 Populus trichocarpa HOM05D002178 ORTHO05D002373 9.9e-07 56.6 49 63.3
Sabra01G0032200 Salix brachista HOM05D002178 ORTHO05D002373 9.9e-07 56.6 49 63.3
Sabra03G0132600 Salix brachista HOM05D000479 ORTHO05D001656 9.9e-07 56.6 49 63.3
Sc10g0008270 Simmondsia chinensis HOM05D002178 ORTHO05D002373 9.9e-07 56.6 40 70.0
TAR636G0031 Trochodendron aralioides HOM05D002178 ORTHO05D002373 9.9e-07 56.6 40 72.5
ECA247G1004 Erigeron canadensis HOM05D002178 ORTHO05D002373 1.3e-06 56.2 40 72.5
Peaxi162Scf00835g00012 Petunia axillaris HOM05D002178 ORTHO05D002373 1.3e-06 56.2 40 72.5
TAR625G0549 Trochodendron aralioides HOM05D002178 ORTHO05D002373 1.3e-06 56.2 40 72.5
MSTRG.4685 Avicennia marina HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
EL10Ac9g22215 Beta vulgaris HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 67.5
AUR62002690 Chenopodium quinoa HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 67.5
AUR62002691 Chenopodium quinoa HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 67.5
AUR62030147 Chenopodium quinoa HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 67.5
AUR62030151 Chenopodium quinoa HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 67.5
Cc02_g22910 Coffea canephora HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
Rhsim08G0207400 Rhododendron simsii HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 72.5
SalBow3G0153 Salvia bowleyana HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
SGA_v2.0_scaffold42G15920 Striga asiatica HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
SGA_v2.0_scaffold8G04431 Striga asiatica HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
TAR383G0564 Trochodendron aralioides HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 70.0
vmacro07317 Vaccinium macrocarpon HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 72.5
vmacro07318 Vaccinium macrocarpon HOM05D002178 ORTHO05D002373 1.7e-06 55.8 40 72.5
FvH4_1g01140 Fragaria vesca HOM05D002178 ORTHO05D002373 2.2e-06 55.5 40 70.0
FAN19G2676 Fragaria x ananassa HOM05D002178 ORTHO05D002373 2.2e-06 55.5 40 70.0
FAN23G1908 Fragaria x ananassa HOM05D000198 ORTHO05D004339 2.2e-06 55.5 40 70.0
FAN26G2631 Fragaria x ananassa HOM05D000198 ORTHO05D004339 2.2e-06 55.5 40 70.0
FAN28G0506 Fragaria x ananassa HOM05D000198 ORTHO05D004339 2.2e-06 55.5 40 70.0
Manes.15G144400 Manihot esculenta HOM05D002178 ORTHO05D002373 2.2e-06 55.5 40 70.0
RcHm_v2.0_Chr2g0085931 Rosa chinensis HOM05D002178 ORTHO05D002373 2.2e-06 55.5 40 70.0
Atru.chr7.60 Acer truncatum HOM05D002178 ORTHO05D002373 2.9e-06 55.1 40 70.0
FAN28G0339 Fragaria x ananassa HOM05D002178 ORTHO05D013497 2.9e-06 55.1 40 67.5
Lsat_1_v5_gn_4_87060 Lactuca sativa HOM05D002178 ORTHO05D002373 2.9e-06 55.1 39 71.8
Manes.17G095500 Manihot esculenta HOM05D002178 ORTHO05D002373 2.9e-06 55.1 41 68.3
Prupe.3G097200 Prunus persica HOM05D002178 ORTHO05D002373 2.9e-06 55.1 40 70.0
CiPaw.14G088800 Carya illinoinensis HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 70.0
FvH4_6g28730 Fragaria vesca HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
FAN02G3922 Fragaria x ananassa HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
FAN05G1444 Fragaria x ananassa HOM05D000479 ORTHO05D001656 3.8e-06 54.7 40 67.5
FAN09G1059 Fragaria x ananassa HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
FAN14G1233 Fragaria x ananassa HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
MBI16_g23889_MAGBIO Magnolia biondii HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 70.0
Oeu027830.1 Olea europaea HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 70.0
Oeu027831.1 Olea europaea HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 70.0
PGR102G2299 Punica granatum HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
RcHm_v2.0_Chr2g0133131 Rosa chinensis HOM05D002178 ORTHO05D002373 3.8e-06 54.7 40 67.5
Ah.12g054860 Amaranthus hybridus HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 65.0
arahy.Tifrunner.gnm1.ann1.8RMH9G Arachis hypogaea HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 72.5
arahy.Tifrunner.gnm1.ann1.T43LTL Arachis hypogaea HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 72.5
FAN19G1357 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.4e-06 53.9 40 67.5
PSO017G2319 Papaver somniferum HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 67.5
PSO170G2869 Papaver somniferum HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 67.5
PSO210G7436 Papaver somniferum HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 67.5
PSO302G0097 Papaver somniferum HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 67.5
Sabra19G0035800 Salix brachista HOM05D002178 ORTHO05D002373 6.4e-06 53.9 40 67.5
Aqoxy7G02325 Aquilegia oxysepala HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 67.5
Aqoxy7G03452 Aquilegia oxysepala HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 67.5
ECA246G3839 Erigeron canadensis HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 70.0
HanXRQChr05g0153791 Helianthus annuus HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 70.0
HanXRQChr08g0235841 Helianthus annuus HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 70.0
Lsat_1_v5_gn_1_32120 Lactuca sativa HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 70.0
Lsat_1_v5_gn_5_8180 Lactuca sativa HOM05D002178 ORTHO05D002373 8.4e-06 53.5 40 70.0
Sed0004247 Sechium edule HOM05D002178 ORTHO05D002373 8.4e-06 53.5 38 73.7


User provided reference genes

Program Settings