Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 5.3e-81 304.3 154 100.0
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 2.7e-72 275.4 140 98.6
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 3.6e-69 265.0 190 76.3
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.6e-61 239.6 176 73.9
Solyc05g042010.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.1e-61 239.2 124 96.8
Solyc12g019450.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 3.9e-55 218.4 118 92.4
Sopen04g009500 Solanum pennellii HOM05D022806 ORTHO05D030645 6.6e-55 217.6 129 86.8
Solyc07g026873.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.6e-32 141.7 73 94.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.6e-29 133.3 150 50.0
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.0e-27 126.3 157 47.1
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 2.1e-24 116.3 134 45.5
Solyc08g015830.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.3e-22 108.6 57 93.0
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 1.3e-21 107.1 98 50.0
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 2.1e-21 106.3 98 55.1
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 2.1e-21 106.3 98 56.1
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 6.2e-21 104.8 98 54.1
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 5.3e-20 101.7 97 54.6
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 5.3e-20 101.7 97 54.6
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 6.9e-20 101.3 98 52.0
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 2.0e-19 99.8 98 52.0
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 3.4e-19 99.0 98 52.0
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 4.4e-19 98.6 192 34.9
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 7.6e-19 97.8 98 51.0
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.9e-19 97.4 130 46.2
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 9.9e-19 97.4 157 36.3
Nitab4.5_0006180g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.8e-18 95.5 64 70.3
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 4.9e-18 95.1 138 37.0
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 8.4e-18 94.4 192 32.3
Nitab4.5_0000008g0430 Nicotiana tabacum HOM05D002954 ORTHO05D015034 8.4e-18 94.4 125 44.8
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 8.4e-18 94.4 80 58.8
Nitab4.5_0002100g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.4e-17 93.6 58 75.9
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 5.4e-17 91.7 98 50.0
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 7.1e-17 91.3 135 37.8
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 7.1e-17 91.3 98 50.0
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 7.1e-17 91.3 132 39.4
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 1.2e-16 90.5 98 48.0
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-16 90.1 135 38.5
Nitab4.5_0004985g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-16 89.4 66 72.7
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 6.0e-16 88.2 98 50.0
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 5.1e-15 85.1 141 36.9
Solyc03g013290.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.5e-14 83.6 44 93.2
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 3.3e-14 82.4 98 46.9
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 3.3e-14 82.4 98 46.9
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 4.3e-14 82.0 98 43.9
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 9.6e-14 80.9 103 44.7
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 1.3e-13 80.5 98 45.9
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.6e-13 80.1 98 41.8
Nitab4.5_0003920g0040 Nicotiana tabacum HOM05D002954 ORTHO05D015034 1.6e-13 80.1 137 40.1
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 2.1e-13 79.7 98 39.8
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 4.8e-13 78.6 98 39.8
Peaxi162Scf00005g00443 Petunia axillaris HOM05D002954 ORTHO05D003353 1.4e-12 77.0 57 64.9
arahy.Tifrunner.gnm1.ann1.35BP8C Arachis hypogaea HOM05D009662 ORTHO05D003353 1.8e-12 76.6 149 31.5
Nitab4.5_0001404g0070 Nicotiana tabacum HOM05D002954 ORTHO05D015034 5.3e-12 75.1 117 41.9
Nitab4.5_0006326g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.3e-12 75.1 120 40.0
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.2e-11 73.9 98 39.8
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 2.6e-11 72.8 97 40.2
Peaxi162Scf00299g00004 Petunia axillaris HOM05D009128 ORTHO05D011389 2.6e-11 72.8 103 41.7
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 3.4e-11 72.4 143 35.7
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 4.5e-11 72.0 104 38.5
TPR.G27910 Trifolium pratense HOM05D009128 ORTHO05D011389 4.5e-11 72.0 103 40.8
Peaxi162Scf00116g00003 Petunia axillaris HOM05D009128 ORTHO05D011389 5.8e-11 71.6 103 39.8
Peaxi162Scf00238g00610 Petunia axillaris HOM05D009128 ORTHO05D011389 5.8e-11 71.6 103 39.8
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.6e-11 71.2 104 37.5
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 9.9e-11 70.9 96 41.7
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.3e-10 70.5 98 39.8
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.7e-10 70.1 98 39.8
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.2e-10 69.7 104 36.5
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.2e-10 69.7 104 36.5
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 2.2e-10 69.7 97 41.2
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 2.9e-10 69.3 100 40.0
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 2.9e-10 69.3 100 40.0
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 3.8e-10 68.9 100 40.0
Nitab4.5_0000755g0260 Nicotiana tabacum HOM05D002954 ORTHO05D015034 3.8e-10 68.9 138 34.8
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.4e-10 68.2 97 37.1
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.4e-10 68.2 97 39.2
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.4e-10 67.8 97 39.2
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.1e-09 67.4 100 42.0
Phvul.010G077600 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.1e-09 67.4 98 40.8
Solyc05g042160.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.1e-09 67.4 43 79.1
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 1.4e-09 67.0 105 37.1
PGSC0003DMG400037966 Solanum tuberosum HOM05D002954 ORTHO05D003353 1.4e-09 67.0 56 58.9
Peaxi162Scf00002g05111 Petunia axillaris HOM05D002954 ORTHO05D003353 1.9e-09 66.6 98 39.8
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 2.4e-09 66.2 123 35.0
Peaxi162Scf00206g01515 Petunia axillaris HOM05D009128 ORTHO05D011389 2.4e-09 66.2 103 37.9
PGSC0003DMG400016266 Solanum tuberosum HOM05D002954 ORTHO05D003353 2.4e-09 66.2 38 89.5
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 3.2e-09 65.9 98 36.7
Psat3g063200 Pisum sativum HOM05D002954 ORTHO05D003353 3.2e-09 65.9 74 45.9
Psat2g134520 Pisum sativum HOM05D002954 ORTHO05D003353 4.2e-09 65.5 97 39.2
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 5.5e-09 65.1 100 37.0
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 5.5e-09 65.1 100 37.0
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 7.1e-09 64.7 94 40.4
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 9.3e-09 64.3 99 39.4
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 9.3e-09 64.3 97 38.1
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 1.2e-08 63.9 102 37.3
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-08 63.9 94 39.4
arahy.Tifrunner.gnm1.ann1.Y6RTQD Arachis hypogaea HOM05D002954 ORTHO05D010308 2.1e-08 63.2 99 40.4
Ca_03866_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 2.1e-08 63.2 95 38.9
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 2.1e-08 63.2 66 51.5
Ca_03767_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 3.5e-08 62.4 100 40.0
Phvul.L002237 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 4.6e-08 62.0 92 39.1
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 6.0e-08 61.6 101 37.6
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 6.0e-08 61.6 99 36.4
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 6.0e-08 61.6 97 37.1
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 6.0e-08 61.6 95 37.9
Phvul.011G145200 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 7.9e-08 61.2 58 53.4
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 1.0e-07 60.8 92 38.0
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-07 60.5 100 37.0
Lalb_Chr21g0312571 Lupinus albus HOM05D009128 ORTHO05D011389 1.3e-07 60.5 104 34.6
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 1.3e-07 60.5 66 51.5
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.8e-07 60.1 99 35.4
Nitab4.5_0000062g0230 Nicotiana tabacum HOM05D002954 ORTHO05D015034 1.8e-07 60.1 80 41.2
COL.COLO4_29219 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.0e-07 59.3 98 36.7
arahy.Tifrunner.gnm1.ann1.E8HHXW Arachis hypogaea HOM05D002954 ORTHO05D010308 3.9e-07 58.9 94 37.2
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 3.9e-07 58.9 132 28.0
arahy.Tifrunner.gnm1.ann1.2IZ9JW Arachis hypogaea HOM05D002954 ORTHO05D003353 5.1e-07 58.5 66 42.4
CAN.G11.13 Capsicum annuum HOM05D000262 ORTHO05D000300 5.1e-07 58.5 57 50.9
Nitab4.5_0000693g0060 Nicotiana tabacum HOM05D002954 ORTHO05D015034 5.1e-07 58.5 46 60.9
PGSC0003DMG400007737 Solanum tuberosum HOM05D002131 ORTHO05D015034 5.1e-07 58.5 95 40.0
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 6.7e-07 58.2 96 37.5
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.7e-07 58.2 132 34.8
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 8.7e-07 57.8 101 34.7
Nn5g26964 Nelumbo nucifera HOM05D029553 ORTHO05D000385 1.1e-06 57.4 91 35.2
Nitab4.5_0000456g0080 Nicotiana tabacum HOM05D002954 ORTHO05D015034 1.1e-06 57.4 44 61.4
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 1.1e-06 57.4 98 35.7
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.1e-06 57.4 101 34.7
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.5e-06 57.0 93 36.6
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.5e-06 57.0 97 37.1
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.9e-06 56.6 97 37.1
VMungo1309G2137 Vigna mungo HOM05D000006 ORTHO05D000001 1.9e-06 56.6 104 32.7
Nitab4.5_0002983g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-06 56.2 34 76.5
Nitab4.5_0006077g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-06 56.2 72 44.4
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.3e-06 55.8 126 29.4
arahy.Tifrunner.gnm1.ann1.FG1AAR Arachis hypogaea HOM05D009662 ORTHO05D003353 4.3e-06 55.5 56 44.6
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.3e-06 55.5 97 33.0
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 5.6e-06 55.1 94 35.1
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 5.6e-06 55.1 97 38.1
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 7.4e-06 54.7 71 45.1


User provided reference genes

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