Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 5.7e-181 637.5 331 100.0
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.4e-163 579.7 292 98.6
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.1e-131 473.8 305 81.3
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 5.8e-125 451.4 281 77.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.4e-123 446.8 296 75.7
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.4e-123 446.0 294 74.8
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 2.7e-122 442.6 263 86.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 2.7e-122 442.6 295 75.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.0e-121 440.7 295 75.3
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.0e-121 440.7 295 74.6
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.3e-121 439.5 295 73.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.3e-121 439.5 296 74.3
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.7e-121 437.6 296 74.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.9e-120 436.4 296 74.0
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 7.4e-120 434.5 296 74.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.6e-120 434.1 298 73.8
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.1e-119 433.0 295 72.5
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.1e-119 433.0 268 78.4
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.6e-119 432.2 285 74.4
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 6.2e-119 431.4 292 73.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 6.2e-119 431.4 295 72.2
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 8.1e-119 431.0 281 74.7
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-118 430.6 278 74.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.1e-118 430.6 283 74.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-118 430.6 281 74.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.4e-118 430.3 281 73.7
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.4e-118 429.5 295 72.5
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 3.1e-118 429.1 285 73.0
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 4.0e-118 428.7 284 74.6
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 5.3e-118 428.3 296 74.0
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 6.9e-118 427.9 270 79.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.5e-117 426.8 283 72.8
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.0e-117 426.4 277 76.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.4e-117 425.6 283 72.4
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 9.9e-117 424.1 281 71.2
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 9.9e-117 424.1 297 72.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.7e-116 423.3 276 75.0
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.7e-116 423.3 302 71.2
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.2e-116 422.9 286 71.7
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.2e-116 422.9 280 74.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 3.8e-116 422.2 291 72.2
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 3.8e-116 422.2 317 69.1
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 4.9e-116 421.8 295 70.2
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 4.9e-116 421.8 290 72.1
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 3.2e-115 419.1 313 69.0
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 7.1e-115 417.9 297 71.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 7.1e-115 417.9 294 72.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.2e-114 417.2 276 71.4
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 1.2e-114 417.2 294 71.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.6e-114 416.8 279 72.4
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.7e-114 416.0 257 77.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.5e-114 415.6 286 70.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 4.6e-114 415.2 286 69.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.0e-114 414.8 268 75.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.8e-113 413.3 278 71.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.3e-113 412.9 298 71.1
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.9e-113 412.1 301 69.4
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 8.7e-113 411.0 280 71.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 8.7e-113 411.0 285 71.2
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.1e-112 410.6 291 68.0
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.1e-112 410.6 304 70.1
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.5e-112 410.2 330 65.2
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.5e-112 410.2 290 71.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.9e-112 409.8 284 71.1
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.6e-111 406.8 277 70.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.8e-111 406.0 285 69.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.8e-111 406.0 279 69.9
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 6.2e-111 404.8 287 69.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-110 403.7 277 69.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.4e-110 402.9 285 68.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 5.3e-110 401.7 351 61.8
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.3e-110 401.7 270 73.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.0e-110 401.0 257 81.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 7.6e-109 397.9 273 72.5
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.0e-108 397.5 290 67.9
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.9e-108 396.0 287 70.7
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 6.5e-108 394.8 270 70.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.4e-107 393.7 269 72.5
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.4e-107 393.7 278 68.7
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 9.3e-107 391.0 278 68.0
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.2e-106 390.6 290 65.2
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.1e-106 389.8 270 69.3
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 6.0e-106 388.3 280 67.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.3e-105 386.3 294 66.3
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.1e-105 385.2 255 77.3
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 6.7e-105 384.8 268 69.8
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 8.7e-105 384.4 268 68.3
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.5e-104 382.9 286 67.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 4.8e-103 378.6 266 68.4
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 8.2e-103 377.9 292 64.4
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 8.2e-103 377.9 266 68.0
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 5.3e-102 375.2 279 66.3
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.9e-100 369.4 265 69.1
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.9e-100 369.4 300 64.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 5.0e-100 368.6 262 67.9
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.2e-99 365.5 257 70.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 5.5e-99 365.2 291 62.9
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 9.3e-99 364.4 291 62.5
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.8e-97 360.1 245 69.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 5.1e-97 358.6 284 64.8
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.1e-94 350.9 291 61.5
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 3.8e-92 342.4 273 62.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 5.0e-92 342.0 258 65.1
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 3.2e-91 339.3 258 65.1
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.6e-90 337.0 262 65.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 7.4e-88 328.2 258 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.8e-87 325.5 248 65.3
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.5e-85 320.5 259 62.9
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 4.5e-85 318.9 249 63.1
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.7e-84 317.0 271 60.1
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 2.1e-82 310.1 207 72.9
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.0e-80 303.5 225 67.1
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.3e-79 300.8 261 59.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.2e-79 300.1 202 71.3
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-78 297.7 207 74.4
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 5.3e-78 295.4 249 61.8
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 7.0e-78 295.0 298 56.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.3e-76 290.8 248 60.5
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.5e-75 286.6 247 61.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.5e-67 260.8 143 90.9
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.4e-64 249.2 219 59.4
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.7e-61 240.0 120 98.3
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 7.2e-59 231.9 299 43.1
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 4.9e-55 219.2 155 67.7
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 6.3e-55 218.8 290 44.8
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 3.2e-46 189.9 120 74.2
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.0e-44 184.9 121 74.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.0e-44 184.9 265 41.1
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.7e-44 184.1 269 39.8
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-35 152.9 133 61.7
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.8e-34 150.2 88 79.5
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 4.0e-33 146.4 118 61.9
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.2e-29 134.8 91 73.6
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 6.2e-26 122.5 83 66.3
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 6.4e-23 112.5 83 63.9
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 7.8e-21 105.5 232 30.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.3e-19 99.8 74 67.6
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 2.1e-18 97.4 295 27.8
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.1e-17 95.1 256 28.5
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.1e-17 95.1 216 30.6
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.2e-17 92.8 76 61.8
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.0e-16 90.9 139 40.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.9e-14 84.3 83 49.4
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 9.3e-14 82.0 210 25.2
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 2.7e-13 80.5 41 87.8
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.5e-13 80.1 58 60.3
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.0e-12 78.6 68 55.9
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.1e-12 76.3 81 50.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.5e-11 73.9 87 43.7
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.8e-09 67.8 310 23.5
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 2.4e-09 67.4 310 23.5
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 5.3e-09 66.2 47 59.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 4.5e-08 63.2 52 59.6
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.9e-07 60.5 233 23.2
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 4.9e-07 59.7 127 31.5
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 4.9e-07 59.7 127 31.5
Cre06.g253900 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146689 2.4e-06 57.4 127 30.7
Cre06.g254002 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D141262 2.4e-06 57.4 127 30.7


User provided reference genes

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