Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 5.5e-192 674.5 435 100.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.1e-187 658.7 445 97.1
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.0e-186 656.0 435 96.8
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.6e-178 629.8 435 92.9
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.6e-175 619.8 437 92.4
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.3e-169 600.1 434 89.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 6.9e-142 508.1 435 73.1
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.4e-139 500.4 431 74.7
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.5e-133 478.8 438 66.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.5e-131 473.0 444 72.3
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 4.6e-130 468.8 434 70.3
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 7.9e-130 468.0 455 73.6
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 1.3e-129 467.2 445 72.1
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.8e-129 466.8 447 73.6
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.3e-129 466.5 431 68.0
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 5.7e-128 461.8 437 75.1
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 9.6e-128 461.1 434 70.0
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 4.8e-127 458.8 460 67.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.2e-127 458.4 441 69.8
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 4.0e-126 455.7 505 61.8
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 3.4e-125 452.6 443 68.2
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 7.6e-125 451.4 436 65.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.0e-124 451.1 441 70.5
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.0e-124 451.1 446 59.6
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 3.8e-124 449.1 437 70.7
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 8.4e-124 448.0 442 74.0
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.1e-123 447.6 438 71.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.5e-123 446.4 436 64.7
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 5.5e-123 445.3 436 69.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 5.5e-123 445.3 433 72.3
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.3e-123 444.5 435 67.8
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 3.5e-122 442.6 511 60.5
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 7.9e-122 441.4 439 74.3
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 7.9e-122 441.4 448 71.2
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.0e-121 441.0 407 75.2
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.0e-121 441.0 448 70.1
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.3e-121 439.9 434 74.2
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.0e-121 439.5 263 81.0
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 8.7e-121 438.0 444 72.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.1e-120 437.6 437 68.0
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.9e-120 436.8 445 54.4
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.4e-120 434.9 435 74.0
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 9.7e-120 434.5 434 72.1
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.3e-119 434.1 437 71.2
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.6e-119 433.7 435 73.6
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.6e-119 433.7 433 71.6
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.7e-119 432.6 417 65.2
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.4e-118 430.6 439 70.2
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.8e-118 430.3 416 63.7
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.9e-118 428.3 435 73.3
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-117 427.2 435 64.1
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.0e-117 426.8 459 67.5
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.6e-117 426.4 434 56.9
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 4.5e-117 425.6 482 64.3
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.3e-116 424.1 511 61.3
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.2e-116 423.3 447 65.1
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 2.9e-116 422.9 524 61.5
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 6.5e-116 421.8 444 66.2
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 8.5e-116 421.4 427 53.9
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.1e-115 421.0 448 63.4
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 5.5e-115 418.7 449 65.0
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 9.4e-115 417.9 248 83.1
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 2.1e-114 416.8 234 83.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 3.6e-114 416.0 434 62.2
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 4.6e-114 415.6 450 66.4
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.0e-113 414.5 256 79.3
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.0e-113 414.5 421 68.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.0e-113 412.9 416 55.0
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 3.0e-113 412.9 442 69.5
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 3.9e-113 412.5 435 63.2
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 5.1e-113 412.1 340 90.3
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 6.7e-113 411.8 256 76.6
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 6.7e-113 411.8 420 67.4
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 6.7e-113 411.8 433 69.1
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.5e-112 409.8 450 58.2
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.3e-112 409.5 445 69.0
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.3e-112 409.1 443 67.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 4.3e-112 409.1 435 63.2
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.7e-112 408.7 433 65.4
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.2e-111 406.8 446 62.1
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.2e-111 406.8 453 63.1
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 2.2e-111 406.8 435 64.8
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 2.8e-111 406.4 451 57.0
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 3.7e-111 406.0 438 54.3
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.1e-110 404.4 451 60.3
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-110 404.4 433 70.9
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.8e-110 403.7 438 65.3
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.1e-110 402.9 436 63.8
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.1e-110 401.4 434 65.9
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-109 401.0 423 66.0
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 2.6e-109 399.8 455 51.9
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.5e-109 399.1 473 66.8
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 2.9e-108 396.4 444 57.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.4e-107 394.0 234 80.8
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 5.1e-105 385.6 450 56.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 9.7e-104 381.3 448 56.5
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.1e-102 375.9 228 77.6
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.9e-99 367.1 262 68.7
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.3e-97 360.1 241 71.4
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.3e-97 360.1 241 71.4
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.8e-95 352.4 230 73.5
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 8.2e-95 351.7 265 66.4
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.1e-94 351.3 229 72.1
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 3.5e-93 346.3 403 58.8
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.3e-92 344.4 391 72.9
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.2e-92 343.6 481 43.2
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.5e-85 319.7 392 63.0
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.7e-79 299.7 154 87.0
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.1e-78 298.1 337 63.2
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.9e-75 287.3 148 86.5
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.4e-72 276.6 209 66.5
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.3e-68 263.8 144 81.9
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.6e-61 241.1 146 78.1
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.5e-59 233.8 248 52.4
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 5.2e-57 226.1 204 53.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 3.4e-56 223.4 218 50.9
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 4.4e-56 223.0 174 64.4
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.8e-56 222.6 316 64.9
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.3e-55 221.5 323 67.8
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 1.7e-55 221.1 113 91.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.7e-55 221.1 324 59.3
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 2.1e-53 214.2 347 63.1
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 4.6e-53 213.0 150 70.0
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.3e-51 206.8 324 52.8
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 2.8e-50 203.8 321 65.7
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 8.4e-47 192.2 101 85.1
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.1e-43 181.8 96 84.4
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.5e-43 180.6 317 52.7
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.3e-43 180.3 96 85.4
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 3.6e-42 176.8 98 82.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.1e-41 175.3 190 52.6
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 2.2e-39 167.5 96 80.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.2e-38 163.7 130 59.2
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 6.0e-37 159.5 84 83.3
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.0e-36 158.7 292 62.7
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 2.3e-36 157.5 296 65.9
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 6.6e-36 156.0 83 83.1
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.1e-34 151.0 85 82.4
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.1e-33 148.7 80 86.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 4.4e-32 143.3 80 83.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.4e-30 137.5 79 81.0
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.3e-27 127.1 321 48.3
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.6e-24 117.5 83 69.9
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 6.4e-23 112.8 287 56.4
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-21 108.6 280 51.1
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.8e-20 104.8 292 51.7
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 2.5e-19 100.9 60 80.0
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 7.4e-19 99.4 77 68.8
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 2.1e-18 97.8 74 59.5
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 4.0e-17 93.6 68 60.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.6e-16 90.9 266 38.0
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 3.9e-12 77.0 43 83.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 9.6e-11 72.4 245 55.9
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 2.8e-10 70.9 63 50.8
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.6e-08 64.3 57 54.4
Os06g0143600 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 5.5e-06 56.6 41 68.3


User provided reference genes

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