Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 6.1e-193 677.6 402 100.0
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.7e-190 668.3 402 98.8
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 5.3e-173 611.3 402 86.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.2e-170 602.1 403 85.1
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.6e-164 583.2 403 83.6
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.1e-162 577.0 403 84.4
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 4.2e-162 575.1 403 87.6
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.3e-160 569.3 401 83.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.5e-159 564.3 403 81.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.0e-157 557.8 403 80.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.0e-157 557.8 403 81.1
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 9.8e-143 510.8 326 88.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 6.4e-142 508.1 412 73.5
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.0e-139 498.4 412 70.1
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.0e-136 488.8 412 71.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.5e-135 486.9 408 69.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.9e-134 482.6 408 69.1
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 7.8e-132 474.6 410 70.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 3.9e-131 472.2 425 67.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.6e-130 468.4 406 68.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.4e-128 463.8 412 67.2
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 7.5e-127 458.0 417 71.2
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.7e-126 455.7 419 67.3
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.9e-126 455.3 412 67.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.1e-124 449.9 412 70.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 4.6e-124 448.7 411 67.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 3.9e-123 445.7 413 66.8
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 5.1e-123 445.3 404 64.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.1e-122 444.1 413 72.6
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.5e-122 443.7 406 67.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 7.3e-122 441.4 405 65.9
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.8e-121 439.5 411 64.7
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 6.2e-121 438.3 412 64.1
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.8e-118 429.1 411 69.6
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.8e-118 429.1 426 65.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 4.9e-118 428.7 412 66.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.4e-118 427.9 415 64.3
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.4e-117 427.2 408 70.3
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.4e-117 426.4 412 61.9
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.4e-117 426.4 409 62.1
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 7.1e-117 424.9 409 61.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.6e-116 423.7 408 64.2
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.7e-116 422.9 409 65.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.6e-116 422.2 415 65.5
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 6.0e-116 421.8 404 66.1
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 7.8e-116 421.4 411 69.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.7e-115 420.2 410 60.7
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.7e-115 420.2 420 64.8
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.9e-115 419.1 404 62.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.3e-114 415.6 353 69.4
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 9.6e-114 414.5 419 65.9
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.8e-113 412.9 410 62.9
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 6.2e-113 411.8 409 64.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 6.2e-113 411.8 413 63.2
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 8.1e-113 411.4 353 69.1
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.4e-112 410.6 419 64.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.1e-112 409.5 427 64.4
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.0e-112 409.1 353 68.8
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.5e-111 407.1 412 63.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-111 407.1 419 61.3
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.8e-111 405.2 417 63.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 5.8e-111 405.2 404 66.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.3e-110 404.1 400 63.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-110 402.5 409 60.9
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.9e-110 402.1 411 62.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.1e-109 401.0 340 70.9
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-109 401.0 409 60.6
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.2e-109 399.1 410 62.7
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 9.3e-109 397.9 401 63.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.6e-108 397.1 405 62.2
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.1e-108 396.7 410 62.0
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.1e-108 396.7 435 62.8
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-108 396.0 409 60.4
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 3.5e-108 396.0 428 66.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 7.8e-108 394.8 405 62.0
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 7.8e-108 394.8 400 60.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.0e-107 394.4 405 62.0
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.0e-107 394.4 429 65.3
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-107 394.4 413 65.9
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.3e-107 393.3 405 61.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.9e-107 392.5 417 60.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.1e-106 391.0 414 64.5
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.9e-106 390.2 400 61.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 2.5e-106 389.8 422 65.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.5e-106 389.8 408 61.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 4.3e-106 389.0 409 60.4
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.6e-105 387.1 400 61.8
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 8.1e-105 384.8 410 60.5
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-104 384.4 414 64.0
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.4e-104 384.0 429 63.6
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.4e-104 384.0 429 63.6
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 4.0e-104 382.5 408 61.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 9.0e-104 381.3 407 59.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.4e-103 379.4 339 65.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.7e-102 377.1 429 58.3
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.8e-102 375.9 429 62.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.9e-102 375.6 428 63.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.2e-101 372.9 420 61.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.4e-101 372.1 429 62.7
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.6e-100 370.5 324 68.8
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.1e-100 370.2 419 62.1
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-99 367.9 419 62.1
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-98 364.4 419 61.6
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.3e-98 362.5 410 58.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 5.6e-98 362.1 432 60.0
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 5.6e-98 362.1 433 61.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 7.4e-98 361.7 330 66.1
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.4e-96 356.7 410 56.3
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.1e-96 356.3 330 63.0
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 4.0e-96 355.9 401 57.4
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 5.3e-96 355.5 315 67.0
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.3e-96 355.5 405 61.5
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 4.5e-95 352.4 436 60.1
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-94 350.5 409 54.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.9e-94 349.7 346 61.8
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 6.4e-94 348.6 437 57.7
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-93 347.1 408 58.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-92 344.4 406 61.3
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 5.1e-91 339.0 336 63.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.3e-89 334.3 349 61.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 5.8e-87 325.5 336 58.3
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.1e-84 317.0 338 55.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.7e-81 306.2 409 53.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.8e-75 287.3 421 49.6
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.7e-74 281.6 238 69.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 5.3e-72 275.8 381 51.4
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 7.7e-71 271.9 349 51.6
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.4e-69 267.7 350 51.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.7e-68 263.5 343 49.6
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.3e-62 244.6 318 52.2
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.2e-61 240.0 410 42.4
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.2e-61 239.6 400 48.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.2e-53 213.0 229 56.8
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 3.6e-52 209.9 201 62.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.7e-49 201.1 276 54.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.7e-49 201.1 276 54.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 5.0e-46 189.5 241 49.8
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 9.4e-45 185.3 261 42.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.6e-44 184.5 277 54.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.7e-44 183.0 339 43.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 8.0e-44 182.2 216 55.6
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.8e-43 181.0 332 40.1
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.2e-43 179.5 169 57.4
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 7.5e-42 175.6 222 55.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 8.3e-41 172.2 344 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.5e-37 158.7 257 38.1
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.0e-35 155.2 102 77.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 7.8e-31 139.0 203 50.2
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.1e-28 131.0 105 66.7
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 8.9e-27 125.6 147 62.6
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.6e-26 124.0 246 34.1
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 9.5e-21 105.5 115 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 6.6e-14 82.8 218 27.1
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-09 68.6 42 83.3
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 7.1e-08 62.8 234 32.9
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 2.7e-07 60.8 41 75.6


User provided reference genes

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