Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 4.1e-50 201.1 99 100.0
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 8.0e-30 133.7 73 91.8
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.4e-26 122.9 61 98.4
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.4e-26 122.9 61 98.4
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.4e-26 122.9 61 98.4
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.8e-26 122.5 61 98.4
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.0e-24 114.4 64 90.6
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.5e-23 112.1 64 89.1
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.5e-23 112.1 64 89.1
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 7.3e-23 110.5 62 90.3
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 9.2e-18 93.6 61 77.0
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 9.2e-18 93.6 51 90.2
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 9.2e-18 93.6 61 77.0
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.2e-17 93.2 61 77.0
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 6.0e-17 90.9 61 75.4
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 6.0e-17 90.9 61 75.4
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 7.8e-17 90.5 64 73.4
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 5.0e-16 87.8 63 69.8
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.6e-16 87.4 47 91.5
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 1.9e-15 85.9 61 68.9
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.9e-15 85.9 73 63.0
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 4.3e-15 84.7 61 73.8
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.6e-15 84.3 63 69.8
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.6e-15 84.3 63 69.8
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 7.3e-15 84.0 72 61.1
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 7.3e-15 84.0 61 72.1
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 9.5e-15 83.6 61 70.5
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 9.5e-15 83.6 61 70.5
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 1.2e-14 83.2 61 70.5
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.2e-14 83.2 61 70.5
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.6e-14 82.8 61 70.5
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.6e-14 82.8 61 70.5
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.6e-14 82.8 61 70.5
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.8e-14 82.0 61 70.5
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 2.8e-14 82.0 62 74.2
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 3.6e-14 81.6 61 68.9
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 4.7e-14 81.3 60 70.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 4.7e-14 81.3 61 68.9
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 71.0
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 8.1e-14 80.5 61 68.9
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 69.4
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.1e-14 80.5 62 69.4
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 8.1e-14 80.5 61 72.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 8.1e-14 80.5 58 72.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 8.1e-14 80.5 58 74.1
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 70.5
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 70.5
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 68.9
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.1e-13 80.1 61 67.2
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 68.9
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 68.9
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 68.9
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 70.5
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 70.5
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.1e-13 80.1 61 67.2
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.4e-13 79.7 61 68.9
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.4e-13 79.7 65 64.6
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.4e-13 79.7 61 67.2
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.4e-13 79.7 61 67.2
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-13 79.3 61 67.2
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.8e-13 79.3 62 69.4
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 2.3e-13 79.0 61 67.2
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 2.3e-13 79.0 61 67.2
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 2.3e-13 79.0 61 67.2
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 3.1e-13 78.6 58 69.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 3.1e-13 78.6 58 69.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 3.1e-13 78.6 61 67.2
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.2e-13 77.8 61 67.2
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 5.2e-13 77.8 58 70.7
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 5.2e-13 77.8 61 67.2
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 6.8e-13 77.4 62 69.4
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 6.8e-13 77.4 58 69.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 8.9e-13 77.0 63 66.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-12 76.6 59 66.1
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.0e-12 75.9 60 65.0
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 2.0e-12 75.9 49 73.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.4e-12 75.1 67 62.7
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.4e-12 74.7 62 66.1
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 4.4e-12 74.7 61 63.9
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 5.8e-12 74.3 58 63.8
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 7.5e-12 73.9 60 63.3
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.9e-12 73.6 58 65.5
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 9.9e-12 73.6 58 65.5
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.1e-10 70.1 58 65.5
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 1.4e-10 69.7 55 65.5
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.9e-10 69.3 56 67.9
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.1e-10 68.2 49 69.4
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 5.4e-10 67.8 52 69.2
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 9.2e-10 67.0 61 60.7
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.6e-09 66.2 53 62.3
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.7e-09 65.5 61 55.7
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.7e-09 65.5 57 63.2
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 2.3e-08 62.4 66 54.5
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 3.0e-08 62.0 61 55.7
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-07 59.7 61 55.7
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.5e-07 59.7 59 54.2
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.9e-07 59.3 61 52.5
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 4.3e-07 58.2 51 60.8
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 5.6e-07 57.8 57 56.1
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 5.6e-07 57.8 57 54.4
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.6e-06 56.2 57 57.9
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 3.6e-06 55.1 47 59.6
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 4.7e-06 54.7 58 51.7


User provided reference genes

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