Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 7.1e-263 910.2 515 100.0
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 8.2e-251 870.2 551 92.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 4.0e-205 718.4 520 81.3
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.0e-197 691.8 518 80.5
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.4e-165 586.3 519 69.4
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 2.6e-156 556.2 449 75.3
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 3.1e-149 532.7 507 62.5
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.2e-147 526.6 522 67.8
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.1e-142 508.1 553 59.3
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.1e-141 507.7 505 58.2
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.0e-140 503.4 520 57.3
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.9e-139 499.6 517 57.4
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-138 497.7 513 60.4
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.1e-119 434.5 346 66.8
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 9.7e-119 431.4 351 61.3
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 6.3e-118 428.7 379 58.6
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 6.3e-118 428.7 357 61.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.2e-115 420.2 373 58.7
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.1e-114 417.9 338 61.5
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 9.4e-114 414.8 366 57.9
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.6e-113 414.1 356 61.0
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 7.9e-113 411.8 352 58.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.3e-110 404.4 355 56.3
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 7.7e-108 395.2 369 58.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.0e-107 394.8 331 58.9
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.0e-107 392.5 374 55.1
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.9e-106 390.6 369 56.9
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.5e-106 390.2 355 59.2
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 4.2e-106 389.4 365 53.7
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.7e-105 386.7 349 53.3
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 8.0e-105 385.2 365 55.3
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 1.0e-104 384.8 357 53.5
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.4e-104 384.4 378 52.9
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 1.8e-104 384.0 349 53.0
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.7e-104 382.1 353 51.8
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 6.7e-104 382.1 368 56.5
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 8.8e-104 381.7 362 56.1
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-103 381.3 339 53.4
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.1e-103 381.3 353 55.2
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.1e-103 381.3 327 58.1
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.6e-103 380.2 325 54.5
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 7.4e-103 378.6 517 42.7
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.7e-102 377.5 344 54.9
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.7e-102 376.3 322 57.5
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 3.7e-102 376.3 386 50.8
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 4.8e-102 375.9 354 53.7
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 4.8e-102 375.9 360 51.4
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 6.3e-102 375.6 489 42.3
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.1e-101 374.8 352 53.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.1e-101 374.8 482 44.4
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 9.1e-101 371.7 378 52.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.6e-100 370.9 337 52.8
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.6e-100 370.9 355 53.8
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.3e-99 367.9 332 59.3
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.7e-99 367.5 337 52.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 5.0e-99 365.9 372 51.1
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.1e-98 364.8 358 52.0
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.9e-98 364.0 484 47.7
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.9e-98 364.0 385 50.1
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 3.2e-98 363.2 380 50.3
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 3.2e-98 363.2 372 50.8
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.2e-98 363.2 379 48.8
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 4.2e-98 362.8 519 42.0
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 7.2e-98 362.1 355 52.7
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 2.7e-97 360.1 376 49.7
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-97 360.1 355 57.7
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 4.7e-97 359.4 368 50.8
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 6.1e-97 359.0 302 58.3
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 6.1e-97 359.0 339 52.2
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.0e-96 358.2 355 52.7
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 4.0e-96 356.3 355 57.7
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 8.8e-96 355.1 339 52.8
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.6e-95 353.6 314 54.8
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.4e-95 353.2 337 53.4
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 4.4e-95 352.8 321 54.2
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 9.7e-95 351.7 352 50.9
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 9.7e-95 351.7 377 46.9
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.7e-94 350.9 338 52.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.7e-94 350.9 356 53.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.7e-94 349.7 333 54.7
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.8e-94 349.4 323 57.6
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 8.3e-94 348.6 367 48.2
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.1e-93 348.2 366 48.4
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.1e-93 348.2 364 49.5
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-93 348.2 312 52.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.8e-93 347.4 373 53.1
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.8e-93 347.4 358 49.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 9.1e-93 345.1 362 48.3
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.0e-92 344.0 369 49.1
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-92 343.6 369 54.5
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 3.5e-92 343.2 362 48.3
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.5e-92 342.8 377 48.8
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.5e-90 337.8 482 46.1
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.5e-90 337.8 366 48.9
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.9e-90 337.4 369 49.3
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 4.2e-90 336.3 349 54.2
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 2.3e-88 330.5 342 48.8
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 4.0e-88 329.7 341 53.4
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 5.2e-88 329.3 347 52.2
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.2e-87 328.2 379 45.9
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.2e-87 328.2 391 49.4
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 2.6e-87 327.0 380 46.1
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.6e-87 327.0 386 50.3
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 5.7e-87 325.9 375 50.7
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.7e-87 325.9 342 48.8
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 5.7e-87 325.9 368 48.9
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.7e-87 325.9 376 51.9
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 7.5e-87 325.5 323 55.1
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 9.8e-87 325.1 380 45.8
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 1.3e-86 324.7 356 52.8
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 8.3e-86 322.0 362 51.7
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.8e-85 320.9 372 50.3
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 1.8e-85 320.9 364 51.6
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.8e-85 320.9 357 50.4
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 5.4e-85 319.3 352 49.4
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 9.1e-85 318.5 367 46.9
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.5e-84 316.2 405 42.5
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 5.0e-83 312.8 507 42.6
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 6.6e-83 312.4 343 44.9
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.5e-82 311.2 240 63.3
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 3.3e-82 310.1 331 50.8
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 7.2e-82 308.9 299 51.5
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.7e-81 306.2 355 49.6
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 6.1e-81 305.8 368 47.6
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 6.1e-81 305.8 374 48.7
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 6.1e-81 305.8 374 48.9
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.1e-81 305.8 281 55.5
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-80 305.1 338 51.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 6.8e-80 302.4 273 58.6
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 1.2e-79 301.6 368 47.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 2.0e-79 300.8 288 51.4
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.7e-79 299.3 282 52.8
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 1.3e-78 298.1 330 50.0
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 2.8e-78 297.0 367 47.7
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 2.8e-78 297.0 367 47.7
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.4e-77 294.7 373 46.9
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 5.0e-75 286.2 457 42.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 8.6e-67 258.8 376 41.2
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.8e-64 251.1 311 39.9
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-62 245.0 267 52.1
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.3e-59 234.2 334 39.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.9e-59 233.4 331 41.4
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 1.1e-58 231.9 329 38.3
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 2.8e-57 227.3 326 42.6
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.2e-57 226.1 331 41.1
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.1e-56 223.8 331 41.1
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 8.3e-54 215.7 211 50.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 3.3e-50 203.8 343 32.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 3.3e-50 203.8 291 40.5
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-49 200.3 164 71.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.1e-49 199.1 198 46.5
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 2.4e-48 197.6 319 34.8
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 7.6e-47 192.6 333 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 2.2e-46 191.0 351 31.3
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.9e-46 190.7 326 36.8
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.8e-46 190.3 326 37.1
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 3.2e-45 187.2 269 36.4
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.1e-42 178.7 268 33.2
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.9e-42 177.9 203 45.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.5e-39 168.3 286 31.8
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.2e-36 158.7 133 57.9
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 3.3e-34 150.6 137 53.3
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.3e-33 148.7 246 37.4
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.8e-33 146.7 166 43.4
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.0e-32 143.7 118 59.3
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.7e-30 138.3 147 46.3
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.1e-27 126.7 107 57.9
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.2e-21 107.1 228 34.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 2.1e-20 104.8 83 57.8
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.3e-18 97.1 64 65.6
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-13 82.0 54 61.1
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.4e-13 82.0 70 52.9
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 6.7e-11 73.2 101 42.6
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 1.6e-09 68.6 239 29.7
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 9.0e-08 62.8 85 38.8


User provided reference genes

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