Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 8.4e-242 840.5 426 100.0
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 8.7e-239 830.5 426 98.8
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 6.0e-232 807.7 429 96.3
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 9.4e-201 704.1 438 83.3
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 8.9e-175 617.8 436 74.1
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.3e-125 454.5 428 55.8
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 5.5e-124 449.1 430 57.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 3.9e-122 443.0 430 57.2
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 6.7e-122 442.2 436 55.7
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.1e-121 441.4 386 58.5
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 1.1e-116 424.9 430 54.9
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 8.7e-114 415.2 428 53.3
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 2.5e-113 413.7 426 52.6
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 5.7e-113 412.5 428 51.9
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 3.7e-112 409.8 437 51.3
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 4.8e-112 409.5 440 52.5
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 5.3e-111 406.0 431 51.7
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 5.3e-111 406.0 425 51.8
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.6e-107 393.3 429 50.1
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 4.8e-104 382.9 426 49.5
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.4e-102 376.7 426 51.4
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 8.5e-101 372.1 426 46.7
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 7.2e-100 369.0 430 46.7
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.6e-99 367.9 419 49.9
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 2.3e-98 364.0 393 50.4
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 3.9e-98 363.2 425 47.1
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.1e-97 361.7 429 49.2
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 3.7e-96 356.7 425 46.8
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.1e-95 355.1 432 47.0
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.8e-95 354.4 385 49.1
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.8e-95 354.4 418 47.6
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 6.9e-95 352.4 428 45.1
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 6.9e-95 352.4 431 44.3
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 9.1e-95 352.1 432 46.5
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.6e-94 350.5 377 50.1
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 5.9e-94 349.4 373 48.0
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 7.7e-94 349.0 426 43.7
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.7e-93 347.8 429 47.6
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 8.5e-93 345.5 429 47.3
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 2.5e-92 344.0 369 50.1
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 3.2e-92 343.6 431 46.4
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 7.2e-92 342.4 427 45.2
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.6e-91 341.3 429 47.1
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 3.6e-91 340.1 434 42.2
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.7e-91 339.7 329 52.6
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 3.0e-90 337.0 428 45.6
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 3.9e-90 336.7 436 46.6
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 8.8e-90 335.5 194 86.6
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 4.4e-89 333.2 353 51.6
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 7.4e-89 332.4 436 44.0
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 7.4e-89 332.4 194 85.1
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 1.3e-88 331.6 328 50.6
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 4.8e-88 329.7 443 44.9
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 3.2e-84 317.0 329 49.8
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 9.4e-84 315.5 429 44.1
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 2.7e-83 313.9 329 48.3
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 2.7e-83 313.9 329 48.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 3.6e-83 313.5 330 48.2
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 6.1e-83 312.8 421 43.7
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.8e-79 301.2 323 48.0
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 3.1e-79 300.4 324 47.5
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 3.1e-79 300.4 324 47.5
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 3.1e-79 300.4 323 47.7
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 5.3e-79 299.7 353 45.9
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 2.0e-78 297.7 329 45.9
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.9e-77 293.9 338 47.0
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.9e-77 293.9 325 47.4
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 6.1e-75 286.2 289 52.2
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.5e-73 281.6 204 67.6
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 3.4e-73 280.4 328 45.1
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 6.3e-72 276.2 339 46.9
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 3.5e-70 270.4 333 42.0
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 7.7e-70 269.2 337 46.3
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 2.3e-69 267.7 340 43.8
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.1e-68 265.4 344 43.9
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.6e-67 261.5 338 43.2
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 1.8e-66 258.1 338 42.6
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.5e-65 255.0 334 41.9
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.4e-65 253.4 351 40.2
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 4.4e-65 253.4 299 43.8
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 7.8e-62 242.7 347 39.5
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.3e-61 241.9 357 40.3
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 1.7e-61 241.5 384 35.4
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 3.8e-61 240.4 239 49.4
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.9e-60 238.0 334 38.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 2.1e-59 234.6 239 48.1
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.2e-57 228.8 339 43.4
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 9.8e-57 225.7 273 42.5
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 6.4e-56 223.0 338 42.0
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 9.2e-55 219.2 194 57.2
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 3.5e-54 217.2 346 41.3
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 5.0e-53 213.4 238 46.6
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.9e-52 211.5 261 44.8
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 3.1e-50 204.1 195 52.8
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.7e-48 198.4 345 36.5
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 2.7e-46 191.0 232 42.7
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.3e-45 188.7 287 36.9
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.9e-44 184.9 432 33.1
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 9.5e-44 182.6 120 75.0
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.0e-25 121.7 159 40.3
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 2.0e-17 95.1 67 65.7
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 3.0e-13 81.3 138 32.6
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 1.2e-09 69.3 285 22.1
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 7.6e-09 66.6 41 68.3
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 2.9e-08 64.7 251 22.7
Potri.005G187800 Populus trichocarpa HOM05D000001 ORTHO05D000003 6.4e-08 63.5 225 22.2
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 8.4e-08 63.2 166 29.5
Psat7g225800 Pisum sativum HOM05D000001 ORTHO05D000003 1.1e-07 62.8 258 22.9
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 1.4e-07 62.4 251 22.7
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 1.9e-07 62.0 251 22.3
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 9.3e-07 59.7 172 25.0
TPR.G15481 Trifolium pratense HOM05D000001 ORTHO05D000003 1.6e-06 58.9 214 22.9
SalBow3G4579 Salvia bowleyana HOM05D007280 ORTHO05D009108 2.1e-06 58.5 77 42.9
THA.LOC104798871 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.7e-06 58.2 213 22.5
TPR.G34116 Trifolium pratense HOM05D000001 ORTHO05D000003 3.5e-06 57.8 264 20.5
Nn3g19691 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.0e-06 57.0 256 19.5


User provided reference genes

Program Settings