Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 9.3e-295 1016.5 678 100.0
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.9e-292 1008.8 678 99.6
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.8e-277 959.1 675 93.0
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.7e-254 882.1 678 90.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 8.6e-216 754.2 682 76.5
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.2e-214 750.4 678 82.6
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 9.8e-212 740.7 672 78.7
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 8.3e-211 737.6 677 74.4
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.1e-210 737.3 681 74.2
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.9e-210 736.5 706 72.9
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.2e-209 733.8 675 75.7
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.6e-209 733.4 667 76.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.0e-209 733.0 675 79.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.0e-209 733.0 675 79.0
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 3.5e-209 732.3 675 75.9
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.7e-208 729.9 676 74.7
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 6.6e-208 728.0 621 83.1
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 8.6e-208 727.6 664 74.7
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.2e-206 723.8 669 79.1
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.8e-206 722.6 682 73.9
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.8e-206 722.6 682 75.5
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.2e-204 717.2 707 65.6
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.0e-204 716.5 679 73.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.4e-204 715.7 675 74.5
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 9.8e-204 714.1 685 77.8
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.7e-203 713.4 682 74.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 9.2e-202 707.6 733 75.2
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.1e-201 706.4 671 73.9
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.1e-201 706.4 657 73.4
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.7e-201 706.1 668 73.4
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 7.8e-201 704.5 678 70.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 8.6e-200 701.0 681 73.7
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 5.6e-199 698.4 573 82.2
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 2.1e-198 696.4 670 73.3
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.6e-198 695.7 649 74.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 6.2e-198 694.9 680 74.1
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 8.1e-198 694.5 689 76.1
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.8e-197 693.3 677 76.2
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.1e-197 692.6 682 71.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 8.9e-197 691.0 677 76.5
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.2e-196 690.6 675 74.4
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 4.4e-196 688.7 677 71.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 5.8e-196 688.3 690 73.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.3e-195 687.2 690 74.1
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.7e-195 686.8 679 69.4
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.2e-195 686.4 679 69.4
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 3.7e-195 685.6 675 74.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.7e-195 685.6 667 72.4
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.9e-195 685.3 675 74.1
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 1.4e-194 683.7 669 74.9
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.9e-194 683.3 663 73.2
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 5.4e-194 681.8 682 70.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 9.2e-194 681.0 665 74.6
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.2e-193 680.6 658 72.8
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.7e-193 679.5 649 74.6
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.7e-193 679.5 674 75.4
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.6e-193 678.7 667 73.3
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.0e-193 678.3 658 72.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.0e-193 678.3 648 73.5
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 6.0e-193 678.3 648 73.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 6.0e-193 678.3 648 73.5
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 6.0e-193 678.3 670 71.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 6.0e-193 678.3 675 69.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 7.8e-193 677.9 672 73.5
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-192 676.4 648 73.5
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.3e-192 676.4 648 73.5
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.3e-192 676.4 680 63.7
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 3.0e-192 676.0 679 72.6
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.1e-192 675.2 669 68.9
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 6.6e-192 674.9 669 74.4
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.6e-192 674.5 662 71.3
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.6e-192 674.5 679 68.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.1e-191 674.1 651 73.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.1e-191 674.1 675 71.1
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.5e-191 672.9 672 71.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.3e-191 672.5 652 75.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.3e-191 672.2 679 72.5
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 5.6e-191 671.8 669 71.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.3e-191 671.4 693 68.4
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.6e-191 671.0 679 66.3
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.2e-190 670.6 663 71.8
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 3.6e-190 669.1 723 64.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.4e-189 667.2 658 74.3
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.8e-189 666.8 679 72.3
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.2e-189 665.2 631 73.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.2e-188 664.1 701 71.2
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 3.4e-188 662.5 682 72.0
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.3e-187 660.6 693 71.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.2e-187 659.8 662 65.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.4e-187 658.3 677 70.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.4e-186 657.1 682 66.0
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.9e-186 656.8 661 73.4
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.4e-186 656.4 666 69.8
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.2e-186 656.0 677 69.7
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 4.2e-186 655.6 572 71.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 6.0e-185 651.7 645 73.0
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.9e-184 649.0 631 72.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.9e-183 646.7 658 67.6
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 5.6e-183 645.2 668 69.2
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.3e-182 644.0 670 71.5
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.3e-179 634.0 570 74.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 4.2e-178 629.0 695 68.6
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 8.1e-174 614.8 605 74.4
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.0e-173 612.5 632 70.6
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.2e-169 600.9 656 68.9
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.2e-169 600.9 667 56.8
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-167 594.0 660 63.9
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 9.0e-165 584.7 577 74.4
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.2e-164 584.3 674 67.2
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.4e-162 577.4 668 64.1
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.7e-161 573.2 528 81.6
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.1e-157 561.2 648 65.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 2.4e-149 533.5 604 63.1
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 7.4e-143 511.9 678 54.3
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 9.1e-141 505.0 506 79.2
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.5e-140 504.2 521 75.8
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 4.5e-140 502.7 526 73.2
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.7e-134 483.0 671 51.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 6.3e-134 482.3 523 73.4
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 4.1e-133 479.6 668 51.9
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.1e-125 454.9 622 53.1
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-119 433.0 528 60.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.8e-113 413.7 257 78.6
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.4e-111 406.8 511 58.3
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.3e-107 394.0 270 73.0
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 5.6e-106 389.4 308 69.2
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.2e-100 371.7 301 65.8
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.3e-99 367.5 481 68.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.5e-95 354.8 508 43.9
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 6.8e-88 329.3 477 57.4
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.4e-85 319.7 221 81.0
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.7e-76 290.8 297 54.5
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-73 282.0 183 78.1
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 7.6e-71 272.7 240 56.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-70 271.6 172 78.5
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.0e-68 263.1 292 84.6
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 6.2e-65 253.1 302 51.0
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.5e-63 248.4 171 80.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 9.9e-63 245.7 319 73.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.5e-58 231.1 138 81.9
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 6.0e-52 209.9 293 45.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.8e-49 201.1 229 52.4
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.7e-49 200.7 289 84.1
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-48 197.6 111 87.4
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 7.6e-47 193.0 291 44.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 4.9e-46 190.3 111 84.7
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 3.1e-40 171.0 87 87.4
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 6.9e-40 169.9 167 56.3
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.5e-37 161.4 181 51.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-34 150.6 321 59.2
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-32 146.0 131 53.4
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.4e-31 141.0 96 75.0
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.9e-30 137.9 93 75.3
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-29 135.2 96 74.0
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-29 135.2 105 67.6
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.9e-22 111.3 601 30.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.5e-21 108.2 69 73.9
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.5e-21 108.2 176 39.8
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 4.7e-20 104.0 158 41.1
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 2.2e-17 95.1 159 43.4
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.2e-17 95.1 201 30.8
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.8e-17 94.7 556 30.9
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.8e-16 92.0 62 71.0
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.4e-16 91.7 68 64.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-15 88.6 66 68.2
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.5e-15 87.8 63 66.7
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 2.2e-14 85.1 64 64.1
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 4.2e-13 80.9 116 42.2
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.0e-11 76.3 52 71.2
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 6.7e-11 73.6 72 51.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.0e-10 72.0 76 51.3
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 7.5e-10 70.1 59 57.6
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 4.8e-09 67.4 49 63.3
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 1.8e-08 65.5 188 31.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.4e-08 65.1 44 68.2
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 4.1e-08 64.3 68 54.4
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 5.3e-08 63.9 56 57.1
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 8.5e-06 56.6 42 57.1


User provided reference genes

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