Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 5.4e-104 381.3 242 100.0
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.6e-103 379.8 242 99.6
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 2.5e-101 372.5 242 97.1
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.2e-87 327.0 242 86.0
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.2e-81 306.2 242 83.9
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.0e-74 283.1 219 86.3
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 1.9e-69 266.5 245 78.4
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.0e-58 229.9 232 56.9
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.1e-53 214.2 230 55.2
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 1.4e-43 180.6 210 53.8
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.7e-41 173.7 233 50.2
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 3.8e-41 172.6 232 46.6
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.8e-38 163.7 243 44.4
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.7e-36 157.1 230 57.4
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.2e-36 154.8 236 41.5
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 5.3e-35 152.1 231 47.6
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 3.8e-33 146.0 231 41.6
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 5.5e-32 142.1 204 48.5
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 7.2e-32 141.7 220 43.6
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.6e-31 140.6 229 42.4
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.6e-31 140.6 242 39.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 1.6e-31 140.6 231 41.6
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 2.1e-31 140.2 231 41.6
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 3.6e-31 139.4 232 40.5
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 3.6e-31 139.4 233 40.8
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 8.0e-31 138.3 240 43.8
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.0e-30 137.9 232 40.9
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.8e-30 137.1 233 40.3
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.8e-30 137.1 243 39.5
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 3.0e-30 136.3 231 40.7
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 4.0e-30 136.0 235 42.1
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.6e-29 133.3 233 48.1
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 4.4e-29 132.5 233 39.9
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 4.4e-29 132.5 232 35.8
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.2e-28 130.2 231 41.6
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 2.2e-28 130.2 223 40.8
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 2.8e-28 129.8 213 40.8
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 2.8e-28 129.8 187 42.8
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.8e-28 129.8 236 39.0
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.8e-28 129.0 215 39.5
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 6.3e-28 128.6 214 42.1
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.1e-27 127.9 236 39.0
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.4e-27 127.5 241 39.0
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.8e-27 127.1 237 39.2
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.8e-27 127.1 232 38.8
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 2.4e-27 126.7 224 47.3
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 5.3e-27 125.6 240 36.7
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 9.1e-27 124.8 235 37.9
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.2e-26 124.4 224 42.4
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 1.2e-26 124.4 226 43.4
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.6e-26 124.0 236 39.0
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 3.5e-26 122.9 241 36.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 3.5e-26 122.9 232 39.7
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 3.5e-26 122.9 236 39.4
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 4.5e-26 122.5 231 37.7
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 4.5e-26 122.5 235 40.0
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 5.9e-26 122.1 226 36.7
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 5.9e-26 122.1 232 38.4
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 5.9e-26 122.1 237 38.8
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 7.7e-26 121.7 202 41.1
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 1.0e-25 121.3 235 38.3
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.7e-25 120.6 232 34.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.1e-24 117.9 231 39.4
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 1.9e-24 117.1 237 35.9
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.5e-24 116.7 214 35.0
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 3.2e-24 116.3 228 46.1
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 3.2e-24 116.3 234 49.1
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 5.5e-24 115.5 229 38.0
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.2e-24 115.2 230 34.3
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 3.6e-23 112.8 204 38.2
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 3.6e-23 112.8 210 36.7
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 6.1e-23 112.1 211 38.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 8.0e-23 111.7 207 40.6
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.8e-22 110.5 229 51.5
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.8e-22 110.5 231 33.8
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.3e-22 110.2 204 37.3
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 2.3e-22 110.2 204 37.7
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.0e-22 109.8 215 33.0
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 3.0e-22 109.8 255 34.5
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 3.0e-22 109.8 209 38.3
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 4.0e-22 109.4 229 49.8
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 4.0e-22 109.4 229 49.8
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 4.0e-22 109.4 236 34.7
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 5.2e-22 109.0 213 53.1
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 5.2e-22 109.0 207 40.1
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 5.2e-22 109.0 233 35.2
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.2e-21 107.8 221 36.7
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 1.5e-21 107.5 227 49.8
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.5e-21 107.5 228 36.8
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 2.0e-21 107.1 210 51.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 2.6e-21 106.7 231 49.8
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 3.4e-21 106.3 223 33.2
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 3.4e-21 106.3 218 33.5
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.5e-21 105.1 235 32.8
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 7.5e-21 105.1 233 31.3
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 9.8e-21 104.8 224 33.9
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 1.3e-20 104.4 229 49.8
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 1.3e-20 104.4 229 49.8
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.7e-20 104.0 230 49.1
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.7e-20 104.0 227 48.0
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.2e-20 103.6 231 32.5
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 2.8e-20 103.2 213 51.2
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 2.8e-20 103.2 214 47.2
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.7e-20 102.8 188 37.8
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 3.7e-20 102.8 227 48.0
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 4.8e-20 102.4 243 32.1
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 6.3e-20 102.1 214 47.7
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 8.3e-20 101.7 208 32.7
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 1.4e-19 100.9 219 48.9
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.8e-19 100.5 231 34.6
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 3.1e-19 99.8 201 48.8
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 3.1e-19 99.8 181 37.6
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 4.1e-19 99.4 206 33.5
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.0e-19 98.6 249 30.9
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 7.0e-19 98.6 231 32.0
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 9.1e-19 98.2 216 47.2
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 3.5e-18 96.3 198 39.9
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.5e-18 96.3 240 31.2
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.9e-18 95.5 232 33.2
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 7.7e-18 95.1 242 28.5
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 7.7e-18 95.1 208 47.6
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 6.5e-17 92.0 235 31.9
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 8.5e-17 91.7 226 31.0
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.1e-16 91.3 219 30.6
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 2.5e-16 90.1 214 32.2
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.5e-16 89.0 218 32.1
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 9.4e-16 88.2 85 56.5
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.2e-15 87.8 235 31.1
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.6e-15 87.4 205 30.7
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 5.2e-14 82.4 224 29.0
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.8e-14 82.0 72 54.2
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.8e-14 81.6 214 37.4
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.4e-13 79.7 224 29.5
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.3e-12 77.8 79 51.9
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 1.7e-12 77.4 224 28.6
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.7e-12 76.3 99 42.4
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.1e-11 74.7 68 60.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 3.5e-10 69.7 68 54.4
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 7.7e-10 68.6 202 27.2
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.8e-09 66.2 55 60.0
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 3.8e-09 66.2 194 33.0
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.9e-08 63.9 68 51.5
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.9e-08 63.9 53 62.3
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 7.3e-08 62.0 232 31.0
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.0e-06 58.2 163 27.0


User provided reference genes

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