Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 3011.1 1632 100.0
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 2615.9 1634 89.0
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 2441.4 1634 83.4
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 2372.8 1400 93.9
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 2141.3 1206 98.4
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1811.2 1207 85.7
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1506.1 1698 55.2
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1502.3 1756 55.2
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1481.5 1747 54.9
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1479.9 1707 57.2
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1469.1 1727 55.6
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1460.7 987 86.3
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1451.8 1694 56.7
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1445.6 1706 55.8
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1444.1 1692 56.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1432.2 1726 54.9
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1428.3 1738 52.8
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1421.0 1677 53.2
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1420.2 1714 54.7
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1417.1 1719 54.7
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1406.0 1727 54.4
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1398.3 1663 53.5
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1391.3 1725 53.4
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1388.6 1716 54.2
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1387.5 1430 60.2
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1381.3 1706 54.0
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1370.9 1700 52.6
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1359.7 1819 51.4
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1333.9 1710 53.3
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1330.5 1726 52.7
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1328.2 1732 51.9
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1326.6 1702 51.4
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1321.6 1709 51.4
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1320.4 1719 52.7
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1319.7 1734 51.3
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1317.0 1719 52.2
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1309.7 1722 50.5
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1307.7 1720 51.3
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1306.6 1728 52.1
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1305.8 1634 52.4
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1305.0 1718 51.7
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1302.3 1726 51.3
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1301.2 1720 50.2
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1295.8 1699 52.0
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1294.3 1741 51.3
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1294.3 1739 51.9
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1292.3 1732 52.0
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1284.6 1705 50.6
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1277.3 1720 51.0
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1276.9 1721 51.5
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1275.8 1695 52.3
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1274.6 1467 55.2
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1273.8 1688 49.7
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1273.5 1923 47.5
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1268.8 1714 50.9
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1267.7 1722 50.8
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1267.3 1713 50.8
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1267.3 1693 51.2
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1265.0 1637 51.1
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1262.3 1714 50.8
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1261.5 1647 52.3
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1255.4 1422 58.2
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1253.4 1627 51.3
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1233.8 1802 48.5
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1221.8 1514 55.5
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1213.0 1608 51.8
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1204.9 1800 48.3
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1147.9 1188 60.7
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1116.3 1454 52.5
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1110.9 1238 58.8
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1084.7 1270 55.1
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1081.2 960 64.3
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1081.2 1242 56.0
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 1.0e-310 1070.8 1316 55.7
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 8.2e-289 998.0 941 62.0
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.8e-288 996.9 1369 48.6
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 4.2e-285 985.7 1228 54.7
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.4e-283 980.7 1453 48.2
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 2.6e-266 923.3 818 64.7
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 1.6e-255 887.5 1103 51.1
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.9e-253 880.6 1431 45.4
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 2.5e-237 827.0 1232 48.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 9.5e-237 825.1 1338 45.2
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 3.1e-171 607.4 1015 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 8.5e-169 599.4 872 44.6
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.4e-165 587.0 427 72.6
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.6e-138 497.3 545 56.0
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 4.6e-138 497.3 752 46.3
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 9.2e-131 473.0 812 43.6
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.2e-124 451.8 1111 34.5
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.0e-117 428.7 735 43.1
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 1.0e-84 320.1 680 41.5
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.0e-82 310.8 708 36.7
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.9e-75 289.3 158 93.7
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.1e-70 273.5 251 56.6
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 1.7e-63 249.6 496 40.3
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.1e-54 220.3 238 50.8
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 5.9e-53 214.5 214 53.7
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 2.2e-39 169.5 210 48.1
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.3e-39 167.9 165 57.6
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 6.3e-39 167.9 160 56.2
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.3e-36 160.2 202 49.5
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 8.8e-33 147.5 1336 22.2
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-31 142.9 258 35.3
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.7e-28 133.3 131 63.4
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.4e-25 123.6 277 37.5
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 4.4e-24 118.6 248 32.7
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 6.4e-23 114.8 102 53.9
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-21 108.2 106 55.7
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 8.6e-20 104.4 279 27.6
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 5.6e-19 101.7 183 40.4
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-14 87.0 64 53.1
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 4.6e-13 82.0 74 56.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 7.8e-13 81.3 59 66.1
unitig_37.g12720 Utricularia gibba HOM05D001674 ORTHO05D008599 8.9e-09 67.8 176 34.1
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 4.1e-06 58.9 71 54.9
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 5.4e-06 58.5 204 32.4


User provided reference genes

Program Settings