Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1842.4 990 100.0
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1638.2 990 90.4
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 0.0e+00 1599.7 852 98.2
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1580.8 990 84.4
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1575.1 990 83.7
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1491.5 998 80.3
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1233.0 994 68.8
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1218.8 993 66.5
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1205.3 995 65.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1203.7 978 67.0
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1201.0 988 66.9
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1191.8 989 65.4
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1191.4 986 65.2
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1189.5 989 63.0
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1182.9 992 65.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1181.0 1032 63.5
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1176.0 987 64.5
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1173.7 988 65.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1172.1 976 65.7
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1172.1 985 65.5
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1158.7 970 65.1
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1157.5 1000 64.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 0.0e+00 1152.5 990 63.7
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1144.0 1014 62.5
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 1055 60.9
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1138.3 982 64.1
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1131.7 970 64.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1130.9 976 64.1
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 0.0e+00 1130.5 996 61.6
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1129.4 982 66.5
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1126.7 991 62.5
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1125.5 970 64.1
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 0.0e+00 1124.0 992 61.3
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1119.4 982 63.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1116.3 991 64.5
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1114.8 978 65.7
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1112.8 984 63.1
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 974 65.7
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1107.8 980 66.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1099.7 978 65.4
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1097.4 974 61.0
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1095.1 990 64.3
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1094.7 976 60.0
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1093.6 977 64.5
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 1001 61.5
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 1023 59.5
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1088.6 971 64.0
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1088.6 969 65.1
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1086.2 970 65.2
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1085.1 1002 60.4
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1083.9 1007 59.7
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1081.6 892 65.8
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 0.0e+00 1077.4 986 60.3
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 8.1e-311 1070.5 972 63.2
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.4e-310 1069.7 984 63.8
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 5.1e-310 1067.8 971 63.1
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 8.7e-310 1067.0 980 64.3
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.5e-309 1066.2 977 62.7
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 3.3e-309 1065.1 994 62.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.1e-307 1060.1 909 64.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.0e-306 1055.8 989 59.7
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.6e-306 1055.4 998 62.1
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.3e-305 1053.1 991 61.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.7e-305 1052.7 890 62.8
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.2e-305 1052.4 971 59.6
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 1.9e-304 1049.3 987 57.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 3.6e-303 1045.0 973 61.6
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 6.1e-303 1044.3 978 62.3
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.0e-302 1043.5 980 63.7
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 2.3e-302 1042.3 978 61.6
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.9e-302 1041.6 974 61.4
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.9e-302 1041.6 974 61.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 8.8e-302 1040.4 974 61.9
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 4.3e-301 1038.1 936 63.0
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 7.4e-301 1037.3 965 62.3
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 3.0e-294 1015.4 986 58.0
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 2.2e-289 999.2 991 59.1
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 3.3e-285 985.3 989 58.0
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 3.3e-285 985.3 975 59.2
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 9.7e-285 983.8 982 59.0
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.3e-273 946.8 929 56.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.0e-266 922.9 987 53.6
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 5.2e-262 908.3 989 55.3
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.5e-261 906.7 913 57.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.7e-260 903.3 973 52.4
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.2e-260 902.9 1010 52.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 7.8e-258 894.4 984 55.6
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.3e-254 882.9 829 59.1
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 9.8e-253 877.5 981 54.6
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 4.9e-252 875.2 979 55.3
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 4.9e-252 875.2 979 55.3
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 8.3e-252 874.4 833 60.5
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 7.0e-251 871.3 825 60.7
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.6e-250 870.2 972 54.6
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.0e-250 869.8 976 54.7
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.5e-250 869.0 825 60.6
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.2e-247 860.5 942 55.4
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 8.1e-247 857.8 932 55.6
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 3.1e-246 855.9 931 55.3
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.2e-235 819.3 896 52.9
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.4e-227 793.1 773 55.4
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.4e-219 767.3 996 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.4e-198 697.6 866 48.3
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.5e-179 633.6 601 61.7
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 7.9e-178 628.6 840 48.5
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 4.4e-160 569.7 825 45.3
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.4e-150 538.1 509 59.7
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 3.5e-133 480.3 651 44.1
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 3.3e-131 473.8 805 37.6
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.0e-128 464.5 485 56.1
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 3.1e-97 360.9 852 31.3
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 2.8e-90 337.8 987 28.9
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.8e-87 327.4 538 43.5
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 4.2e-70 270.8 395 45.3
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 7.4e-67 260.0 242 56.2
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 3.7e-66 257.7 889 24.6
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 2.6e-64 251.5 248 53.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.1e-59 236.1 172 70.9
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.0e-28 131.7 397 30.5
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.4e-25 120.9 67 82.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 5.9e-24 117.5 80 68.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 1.2e-21 109.8 110 55.5
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 3.4e-19 101.7 90 56.7
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.7e-18 99.4 90 55.6
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.9e-17 95.9 67 67.2
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.2e-16 93.2 102 52.9
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 4.6e-16 91.3 90 55.6
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.5e-14 85.5 158 37.3
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.7e-10 71.6 216 34.3
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 5.4e-09 67.8 42 73.8


User provided reference genes

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