Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 0.0e+00 1079.7 523 100.0
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.3e-309 1065.4 523 98.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 6.0e-302 1040.0 526 96.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.9e-280 968.0 529 90.4
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.1e-254 882.1 525 83.2
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 4.1e-234 814.7 526 75.3
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.8e-233 810.4 533 74.3
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.7e-232 809.3 492 77.8
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.5e-231 805.4 476 79.6
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 5.6e-231 804.3 464 80.2
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.8e-230 802.0 531 73.3
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 8.1e-230 800.4 562 70.6
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.8e-229 799.3 464 79.5
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 4.0e-229 798.1 468 78.6
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.2e-228 796.6 475 78.3
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.5e-228 796.2 469 78.5
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.0e-228 795.8 464 80.2
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 7.5e-228 793.9 478 77.4
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.7e-227 791.6 531 72.7
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 4.9e-227 791.2 481 77.3
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 6.4e-227 790.8 529 71.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 6.4e-227 790.8 533 72.2
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.4e-227 790.8 537 71.3
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.1e-226 790.0 531 72.5
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.4e-226 787.7 487 76.0
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.4e-226 787.7 522 72.8
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 5.4e-226 787.7 478 77.0
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 7.1e-226 787.3 477 76.3
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.2e-225 786.6 466 78.8
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.1e-225 785.8 487 74.9
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 4.6e-225 784.6 525 72.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 6.0e-225 784.3 539 71.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.7e-224 782.7 531 71.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.7e-224 782.7 524 72.1
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 2.3e-224 782.3 520 73.1
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.3e-224 782.3 488 74.8
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 6.6e-224 780.8 482 75.5
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.9e-223 779.2 472 76.5
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.5e-223 778.9 464 78.4
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.5e-223 778.9 464 78.4
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 9.5e-223 776.9 539 67.9
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.2e-222 776.5 469 77.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.1e-222 775.8 550 69.5
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 2.1e-222 775.8 538 67.8
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 4.7e-222 774.6 486 73.3
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 4.7e-222 774.6 475 76.2
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 8.1e-222 773.9 463 77.1
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.0e-221 771.5 542 70.1
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 5.2e-221 771.2 459 78.6
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 5.2e-221 771.2 509 71.5
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.9e-221 770.4 461 78.1
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 8.9e-221 770.4 466 75.3
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.2e-220 770.0 492 74.0
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.2e-220 770.0 608 63.8
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.5e-220 769.6 524 70.0
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.0e-220 769.2 539 70.3
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 9.9e-220 766.9 557 67.1
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 3.8e-219 765.0 464 75.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 8.4e-219 763.8 461 76.4
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-218 763.5 461 76.6
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.4e-218 762.3 467 75.4
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 3.2e-218 761.9 464 75.2
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.0e-216 756.9 463 76.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.0e-216 756.9 464 76.3
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 2.3e-216 755.7 529 69.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 3.9e-216 755.0 467 73.9
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 8.6e-216 753.8 482 73.2
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.9e-215 752.7 491 70.7
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.9e-215 752.7 475 72.2
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.9e-215 752.7 467 76.4
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 7.3e-215 750.7 459 74.9
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 7.3e-215 750.7 509 69.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.1e-214 749.2 509 69.4
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.8e-214 748.8 504 72.4
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 6.2e-214 747.7 487 71.9
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 4.0e-213 745.0 509 69.9
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 4.0e-213 745.0 477 72.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 4.0e-213 745.0 476 72.1
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 4.0e-213 745.0 586 63.7
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 4.0e-213 745.0 444 78.6
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 9.0e-213 743.8 644 59.6
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.2e-212 743.4 504 69.2
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.2e-212 743.4 471 73.0
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 7.6e-212 740.7 436 79.1
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.7e-211 739.6 502 68.9
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.2e-211 739.2 461 76.4
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 6.4e-211 737.6 475 71.8
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-210 736.9 475 71.8
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.2e-210 735.3 484 73.8
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 5.4e-210 734.6 514 68.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.1e-210 734.2 478 73.4
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.2e-209 733.4 515 70.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.1e-209 732.6 464 73.1
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 2.7e-209 732.3 467 72.4
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 5.1e-208 728.0 473 71.0
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 2.5e-207 725.7 489 68.9
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.2e-203 712.6 459 71.9
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 7.1e-202 707.6 459 71.7
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 6.0e-201 704.5 427 82.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 3.9e-200 701.8 458 71.2
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 6.7e-200 701.0 421 76.0
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 3.7e-198 695.3 462 70.8
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.8e-197 693.0 421 75.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 4.2e-194 681.8 457 73.7
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.6e-190 669.8 464 67.9
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 6.9e-189 664.5 472 66.3
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 4.5e-188 661.8 444 70.5
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.5e-186 656.0 377 85.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.2e-185 653.7 463 65.7
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 7.9e-185 651.0 462 65.2
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.4e-181 639.4 421 72.0
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 9.0e-181 637.5 480 61.9
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.5e-180 636.7 463 65.2
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 8.5e-179 630.9 442 65.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 5.5e-178 628.2 463 64.4
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 2.1e-177 626.3 464 65.7
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.7e-174 616.7 469 65.9
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 5.3e-173 611.7 458 62.9
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.3e-171 607.1 454 63.7
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.1e-167 594.0 466 61.8
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.7e-163 580.1 348 77.9
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.0e-155 554.3 486 57.2
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 5.0e-139 498.8 351 68.7
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 8.0e-129 464.9 516 48.1
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.5e-122 444.1 418 52.2
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 9.8e-119 431.4 304 70.1
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 5.6e-114 415.6 255 74.9
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.1e-113 413.7 316 63.3
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.6e-100 370.9 261 67.0
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 4.9e-94 349.4 326 56.4
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-91 339.7 255 60.4
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.5e-84 316.6 214 64.5
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 6.0e-84 315.8 197 74.6
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 5.8e-79 299.3 242 58.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.2e-63 248.4 152 79.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 5.9e-55 219.5 144 70.8
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.5e-53 214.2 162 61.1
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 9.4e-53 212.2 113 86.7
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 9.7e-42 175.6 176 52.8
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 4.8e-41 173.3 101 83.2
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.4e-40 171.8 157 58.6
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.1e-37 162.2 91 78.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.1e-36 157.9 115 67.8
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.2e-33 147.9 129 59.7
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 2.3e-19 101.3 113 54.0
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 2.3e-14 84.7 57 59.6
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 1.9e-13 81.6 52 78.8
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 1.9e-13 81.6 52 78.8
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 6.8e-11 73.2 58 67.2
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 9.8e-10 69.3 57 57.9
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.2e-07 62.4 50 70.0
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 4.6e-07 60.5 51 64.7


User provided reference genes

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