Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 7.1e-221 771.2 707 100.0
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.5e-207 726.9 707 82.3
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.2e-196 690.6 714 90.6
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.5e-165 585.5 709 87.3
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.3e-162 576.2 714 85.7
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 8.5e-150 535.0 725 82.8
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.2e-103 381.7 675 73.8
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.8e-100 370.5 722 67.2
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.5e-98 364.8 670 72.8
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.0e-98 364.4 671 72.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-97 361.3 618 77.2
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 6.4e-97 359.4 672 72.8
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.9e-96 357.8 618 77.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.3e-94 351.7 675 66.1
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 3.3e-93 347.1 620 73.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 4.3e-93 346.7 311 60.5
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 4.3e-93 346.7 618 75.9
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 5.6e-93 346.3 666 70.9
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.6e-92 344.7 659 70.7
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.6e-92 343.6 619 74.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 6.2e-92 342.8 625 74.2
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 3.1e-91 340.5 677 71.0
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 9.0e-91 339.0 616 65.4
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 9.0e-91 339.0 714 67.9
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 9.0e-91 339.0 724 68.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.2e-90 338.6 666 71.2
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 3.4e-90 337.0 293 59.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.7e-89 334.7 721 68.9
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 8.4e-89 332.4 707 69.2
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 8.4e-89 332.4 668 73.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.9e-88 331.3 693 67.2
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.9e-88 331.3 685 68.6
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 4.2e-88 330.1 675 70.2
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.2e-87 328.6 678 68.9
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.2e-87 328.6 706 70.5
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 7.9e-87 325.9 696 67.0
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.0e-86 325.5 695 66.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.3e-86 325.1 660 70.0
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.3e-86 324.3 675 69.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.5e-85 320.9 701 62.1
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 4.3e-85 320.1 620 68.4
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 7.4e-85 319.3 685 67.9
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.6e-84 318.2 620 72.6
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.6e-84 318.2 277 58.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.7e-84 317.0 675 68.3
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.4e-83 314.3 624 72.9
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.1e-83 313.9 299 57.5
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 3.1e-83 313.9 492 93.9
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 4.0e-83 313.5 547 79.9
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.0e-82 311.2 630 73.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 3.4e-82 310.5 708 65.4
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 4.5e-82 310.1 695 64.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.7e-81 308.1 649 70.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.2e-81 307.8 716 65.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.2e-81 307.8 704 63.2
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 6.4e-81 306.2 277 56.7
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.5e-80 304.3 700 66.6
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.6e-79 301.6 700 62.3
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 4.6e-79 300.1 716 65.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 4.6e-79 300.1 693 67.0
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 4.6e-79 300.1 704 66.2
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 6.0e-79 299.7 717 65.6
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 6.0e-79 299.7 352 47.4
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.8e-78 298.1 328 50.6
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.8e-78 298.1 569 75.2
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.9e-78 297.0 678 67.7
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.5e-77 295.0 707 64.4
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 4.3e-77 293.5 711 64.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.6e-77 293.1 724 63.1
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 5.6e-77 293.1 552 75.7
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.6e-76 291.6 706 65.0
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.1e-76 291.2 663 65.8
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 3.7e-76 290.4 621 68.6
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 6.2e-76 289.7 711 63.7
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 9.0e-75 285.8 621 69.2
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 4.5e-74 283.5 372 47.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 5.8e-74 283.1 621 69.4
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 7.6e-74 282.7 355 46.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.7e-73 281.6 621 69.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 3.8e-73 280.4 300 52.3
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 7.1e-72 276.2 244 57.8
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.1e-71 274.6 674 68.8
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 6.0e-71 273.1 726 57.3
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.9e-70 270.4 269 52.8
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 5.7e-69 266.5 621 63.4
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.6e-68 265.0 621 63.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.2e-68 264.6 621 63.1
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.2e-68 264.6 272 50.7
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 3.7e-68 263.8 621 62.6
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 6.3e-68 263.1 621 62.5
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.3e-68 263.1 347 46.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 8.2e-68 262.7 299 49.8
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.8e-67 261.5 618 69.9
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.3e-65 255.4 317 45.7
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.5e-61 241.1 628 66.7
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 3.7e-60 237.3 502 79.7
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.6e-58 231.1 258 49.6
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.1e-48 199.1 201 47.3
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 9.4e-48 196.1 156 60.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 1.8e-43 181.8 154 57.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 9.4e-40 169.5 185 44.3
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.9e-32 145.2 122 59.0
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.2e-29 136.0 124 55.6
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.4e-27 129.0 299 30.4
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.4e-27 129.0 189 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 4.7e-23 114.0 265 29.8
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.5e-18 97.8 174 38.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.9e-18 97.1 61 80.3
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 3.9e-17 94.4 64 71.9
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 6.6e-17 93.6 64 73.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.6e-13 81.6 58 70.7
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 5.8e-13 80.5 58 65.5
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 9.8e-13 79.7 80 51.2
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.7e-09 68.9 55 65.5
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 5.0e-09 67.4 48 62.5
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 2.1e-07 62.0 115 31.3
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.1e-06 59.7 145 24.1


User provided reference genes

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