Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1192.6 572 100.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1186.0 572 99.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 0.0e+00 1164.4 572 97.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 0.0e+00 1129.8 572 94.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1124.8 572 93.9
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 0.0e+00 1116.7 572 93.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1115.1 551 96.7
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1114.0 572 93.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1114.0 551 96.6
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 0.0e+00 1075.5 573 89.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 4.3e-309 1063.9 573 88.5
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 8.6e-302 1039.6 573 86.2
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.7e-297 1025.4 556 87.1
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.7e-297 1025.4 556 87.1
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 8.4e-297 1023.1 553 87.3
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 7.1e-296 1020.0 561 85.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.0e-294 1016.1 549 87.8
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.3e-294 1015.0 560 85.5
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.9e-293 1011.9 543 87.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 572 84.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 562 84.9
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 572 84.3
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 552 86.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 8.1e-292 1006.5 549 86.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 549 86.3
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.8e-291 1005.4 549 86.2
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 3.1e-291 1004.6 549 86.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 561 84.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 6.9e-291 1003.4 553 85.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 549 86.3
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 572 82.7
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 549 85.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 549 84.9
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 4.4e-290 1000.7 561 84.8
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 4.4e-290 1000.7 585 82.1
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 5.8e-290 1000.3 549 86.2
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.3e-289 999.2 549 85.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 2.2e-289 998.4 549 85.6
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 4.9e-289 997.3 557 84.4
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 8.4e-289 996.5 549 85.8
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.4e-288 995.7 551 84.6
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.4e-288 995.0 574 82.9
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.2e-288 994.6 551 84.6
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.2e-288 994.6 569 83.5
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 4.2e-288 994.2 574 82.4
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 5.4e-288 993.8 550 85.3
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 5.4e-288 993.8 590 81.4
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.1e-288 993.4 551 84.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.1e-288 993.4 549 84.7
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 9.3e-288 993.0 549 84.7
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 9.3e-288 993.0 542 86.5
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-287 992.6 563 84.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.1e-287 991.9 549 85.4
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.1e-287 991.9 549 84.7
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 2.7e-287 991.5 542 86.5
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.8e-287 989.9 551 84.0
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.3e-286 988.4 542 86.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.0e-286 988.0 549 83.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.5e-285 985.7 549 83.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.9e-285 985.3 560 83.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.5e-285 984.9 549 84.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.3e-285 984.6 549 83.8
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 9.6e-285 983.0 563 82.6
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.8e-284 981.5 549 83.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.8e-283 978.8 549 83.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.1e-283 978.0 547 84.1
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 4.0e-283 977.6 542 85.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 6.9e-283 976.9 549 83.6
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 6.9e-283 976.9 549 83.8
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.4e-282 974.5 549 83.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.7e-281 972.2 549 82.9
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.8e-281 971.1 551 82.9
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-279 966.1 552 83.3
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.6e-279 965.7 549 82.7
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.1e-279 965.3 551 82.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 7.9e-279 963.4 551 82.6
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.8e-278 962.2 551 82.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 5.1e-278 960.7 550 82.7
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 7.4e-277 956.8 571 80.4
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.8e-276 954.9 560 80.2
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 4.8e-276 954.1 529 86.6
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.2e-276 953.7 550 81.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 2.4e-275 951.8 557 81.1
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 6.9e-275 950.3 542 82.3
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.3e-273 946.0 557 80.8
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.2e-273 945.3 550 81.8
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.8e-273 944.5 541 82.1
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-271 939.5 542 81.7
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 5.6e-269 930.6 559 79.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 5.6e-269 930.6 553 81.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.4e-269 930.2 541 80.8
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 4.8e-268 927.5 551 80.8
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.0e-267 924.5 549 79.8
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.7e-263 911.8 561 78.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.9e-262 907.9 562 78.8
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.6e-260 902.5 550 80.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.8e-260 901.0 555 76.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.2e-258 896.3 572 75.9
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.0e-258 895.6 545 76.1
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.2e-252 873.6 541 76.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.4e-251 872.8 551 74.6
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-251 872.8 541 76.5
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.9e-251 870.5 549 76.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 9.1e-251 870.2 543 76.6
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 2.2e-249 865.5 494 83.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 5.9e-242 840.9 552 73.7
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.1e-240 836.6 548 72.1
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.2e-240 834.7 563 74.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.1e-239 832.4 549 74.3
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.0e-237 825.9 455 87.0
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.5e-234 814.7 556 70.7
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.5e-232 809.7 549 73.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 5.5e-232 807.7 556 69.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.7e-228 795.0 506 75.5
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 6.5e-225 784.3 547 68.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.6e-223 779.6 424 87.5
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.8e-220 768.8 423 86.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 5.0e-217 758.1 543 67.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.6e-215 753.1 547 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-208 730.3 548 64.6
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.9e-206 720.7 538 66.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.9e-206 720.7 538 66.4
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.6e-200 701.4 606 61.7
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 4.8e-167 592.0 330 84.8
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 5.3e-166 588.6 334 82.9
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.2e-165 587.4 561 57.8
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 5.5e-147 525.4 292 85.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.2e-141 507.7 545 49.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.4e-131 474.2 270 80.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.9e-131 473.8 309 74.8
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 2.1e-122 443.7 334 66.8
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 9.5e-99 365.2 199 84.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.7e-90 336.3 501 43.3
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-70 271.9 338 45.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.2e-69 268.5 133 98.5
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 4.6e-69 266.5 196 64.8
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.6e-58 231.5 139 79.9
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.9e-53 212.6 135 74.8
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.1e-50 204.5 137 71.5
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.1e-50 204.5 123 75.6
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.2e-50 203.0 111 83.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-48 198.0 137 68.6
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-48 198.0 137 68.6
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.4e-46 191.0 120 73.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.4e-46 191.0 120 73.3
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.2e-45 188.7 109 74.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.5e-43 181.0 119 71.4
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.5e-43 181.0 119 71.4
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-43 181.0 119 70.6
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.5e-38 164.5 76 96.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 4.2e-38 163.7 95 75.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 5.8e-32 143.3 79 84.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.8e-26 123.6 86 70.9
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 3.1e-25 120.9 118 50.8
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 5.0e-23 113.6 189 40.7
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 9.4e-22 109.4 60 80.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.0e-20 104.4 68 72.1
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 9.1e-17 92.8 63 71.4


User provided reference genes

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