Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1148.3 551 100.0
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1140.9 551 99.1
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1118.6 551 96.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1114.8 551 96.6
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 0.0e+00 1113.6 551 96.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 0.0e+00 1092.8 551 94.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1090.5 551 94.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 0.0e+00 1080.1 551 93.3
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1078.9 551 93.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.0e-305 1049.7 551 90.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.4e-301 1038.1 551 89.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 2.3e-296 1021.5 550 87.6
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.3e-296 1021.5 550 87.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 5.8e-295 1016.9 550 87.1
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.7e-294 1014.2 550 86.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.9e-293 1011.9 549 87.4
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 4.1e-293 1010.7 551 86.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.6e-292 1008.8 550 86.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 6.0e-292 1006.9 545 87.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.9e-291 1004.2 550 86.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 6.6e-291 1003.4 549 84.9
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 549 86.2
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-290 1001.5 549 86.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.3e-290 1001.1 549 84.7
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.3e-290 1000.7 549 86.0
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 5.6e-290 1000.3 549 86.0
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 7.3e-290 1000.0 549 86.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-289 998.4 549 86.2
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 3.6e-289 997.7 550 86.0
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.6e-289 997.7 547 85.7
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 6.2e-289 996.9 551 85.5
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 8.1e-289 996.5 549 85.2
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 6.8e-288 993.4 549 85.1
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.2e-287 992.6 550 84.9
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.5e-287 992.3 551 84.6
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.6e-287 991.5 551 85.3
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.6e-287 991.5 574 82.4
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.4e-287 991.1 551 84.6
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 5.8e-287 990.3 549 84.3
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.3e-286 989.2 549 84.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.7e-286 988.8 549 84.5
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.7e-286 988.8 549 84.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.2e-286 988.4 550 85.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.9e-286 988.0 551 84.0
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 3.7e-286 987.6 550 84.7
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.7e-286 987.6 550 85.3
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 6.4e-286 986.9 549 85.1
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 6.4e-286 986.9 549 84.7
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.4e-286 986.5 551 84.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.1e-285 986.1 549 84.5
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.9e-285 985.3 551 84.8
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.9e-285 985.3 581 81.6
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.4e-285 984.9 552 85.0
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.2e-285 984.6 549 83.8
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.2e-285 984.6 550 85.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 7.1e-285 983.4 551 83.1
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 9.2e-285 983.0 552 84.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 9.2e-285 983.0 549 83.4
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.6e-284 982.2 549 83.1
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.5e-284 981.1 549 84.5
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 7.8e-284 979.9 549 83.2
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.3e-283 978.4 552 83.7
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.5e-282 975.7 549 83.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 9.6e-282 973.0 544 84.7
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 4.7e-281 970.7 549 83.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 4.7e-281 970.7 549 83.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.4e-280 969.1 549 82.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.4e-280 968.4 549 83.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 2.4e-280 968.4 547 83.4
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 4.0e-280 967.6 542 84.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.2e-279 966.1 549 82.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 4.4e-279 964.1 551 82.4
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-278 962.6 551 82.2
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-278 961.4 552 83.2
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 4.9e-278 960.7 551 82.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.9e-277 958.7 551 82.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 4.2e-277 957.6 549 81.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.0e-275 953.0 550 81.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.3e-275 952.6 550 82.2
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.1e-274 949.5 546 81.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 4.3e-274 947.6 529 85.6
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.6e-273 945.7 557 80.6
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 4.8e-273 944.1 549 80.3
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 4.8e-273 944.1 544 81.8
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 6.2e-273 943.7 554 82.1
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.0e-272 941.0 546 81.3
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.2e-271 939.5 542 81.5
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 5.8e-271 937.2 542 81.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 5.4e-269 930.6 541 80.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.2e-268 929.5 553 80.8
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 6.6e-267 923.7 549 80.1
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 7.4e-266 920.2 529 83.2
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 9.0e-264 913.3 549 78.9
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 6.4e-262 907.1 550 80.2
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.4e-261 906.0 549 78.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.3e-259 899.4 550 79.6
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.3e-259 898.7 555 77.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 6.2e-257 890.6 542 76.2
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 3.4e-255 884.8 551 77.9
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.9e-251 871.3 541 76.5
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.7e-251 870.5 541 76.3
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.3e-250 867.8 543 76.4
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 5.7e-250 867.5 551 74.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.1e-248 863.2 494 83.0
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.1e-248 863.2 549 74.7
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 4.8e-241 837.8 548 72.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 9.0e-240 833.6 563 74.1
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.4e-239 831.6 551 73.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.9e-238 828.6 540 74.8
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.1e-236 820.8 455 86.2
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.2e-233 810.4 549 71.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 2.4e-232 808.9 549 73.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.4e-229 799.7 542 70.5
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.7e-228 795.4 506 75.3
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 7.0e-224 780.8 547 68.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.5e-221 773.1 424 86.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 5.7e-218 761.1 423 85.8
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.0e-215 752.7 543 67.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.7e-215 752.3 547 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.4e-208 729.9 548 64.8
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.5e-206 721.1 538 66.7
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.5e-206 721.1 538 66.7
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.0e-198 697.2 606 61.4
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.1e-168 594.7 330 85.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.6e-167 592.0 334 83.2
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.1e-164 583.2 550 58.2
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.6e-146 523.1 292 84.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.5e-141 507.3 546 49.5
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 9.0e-131 471.5 309 73.8
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.5e-129 464.9 258 82.2
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.1e-120 438.0 334 65.6
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.9e-97 360.1 199 83.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-92 344.0 501 43.7
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 8.9e-70 268.9 133 97.7
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 5.8e-69 266.2 338 45.9
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.7e-68 264.6 186 65.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 4.9e-60 236.5 139 81.3
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 9.9e-53 212.2 129 76.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 7.1e-51 206.1 137 71.5
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-50 203.8 111 84.7
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.9e-48 198.0 111 79.3
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.5e-48 197.6 127 73.2
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.5e-48 197.6 127 73.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-46 191.8 120 73.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.4e-46 191.8 120 73.3
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.0e-45 188.0 109 73.4
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-43 181.8 119 71.4
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.4e-43 181.8 119 71.4
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-42 178.7 119 70.6
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 4.0e-38 163.7 95 75.8
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.0e-38 162.5 76 94.7
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 3.3e-32 144.1 79 84.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.6e-26 123.6 86 70.9
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 3.0e-25 120.9 118 50.8
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 2.1e-23 114.8 189 41.3
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 9.0e-22 109.4 60 81.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.9e-20 104.4 68 72.1
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.8e-15 87.8 63 66.7


User provided reference genes

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