Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.5e-144 516.2 266 100.0
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 3.6e-141 505.0 266 97.7
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.1e-125 452.6 361 70.4
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 6.5e-111 404.4 266 80.8
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-101 373.6 259 77.6
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 6.1e-101 371.3 251 78.5
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 1.8e-100 369.8 258 76.7
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 1.8e-76 290.0 240 63.8
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 8.9e-76 287.7 256 61.7
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 7.6e-75 284.6 267 61.4
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 1.0e-71 274.2 275 57.8
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.9e-70 270.0 259 56.4
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 2.5e-70 269.6 256 59.4
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 3.3e-70 269.2 199 67.8
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.3e-70 268.9 259 56.4
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 7.3e-70 268.1 231 61.9
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 7.3e-70 268.1 259 56.4
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 2.8e-69 266.2 244 58.2
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 4.7e-69 265.4 222 60.4
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 6.2e-69 265.0 259 55.6
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 1.4e-68 263.8 213 62.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 4.0e-68 262.3 213 61.5
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 7.6e-67 258.1 215 60.9
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 9.9e-67 257.7 231 61.0
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.8e-66 255.8 249 54.6
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.9e-65 253.4 239 57.7
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.9e-65 253.4 243 57.6
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 5.4e-65 251.9 247 56.3
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 2.7e-64 249.6 211 62.1
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 2.7e-64 249.6 210 62.4
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 2.7e-64 249.6 246 50.8
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 4.6e-64 248.8 241 57.3
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.0e-63 247.7 227 61.7
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.7e-63 246.9 212 59.4
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.0e-63 246.1 212 58.5
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 3.0e-63 246.1 249 54.2
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 5.1e-63 245.4 217 58.5
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 6.6e-63 245.0 216 58.8
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 6.6e-63 245.0 216 58.8
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.1e-62 244.2 216 57.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 1.9e-62 243.4 239 54.4
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 3.3e-62 242.7 229 55.5
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 3.3e-62 242.7 213 57.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 4.3e-62 242.3 230 57.0
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 4.3e-62 242.3 225 58.2
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.3e-61 240.7 238 52.9
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 3.6e-61 239.2 216 58.3
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.4e-60 237.3 214 56.5
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.8e-60 236.9 226 54.9
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 2.4e-60 236.5 231 55.8
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 3.1e-60 236.1 238 52.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 5.3e-60 235.3 218 56.0
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 6.9e-60 235.0 210 57.1
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.5e-59 233.8 261 51.3
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.6e-59 233.0 236 52.1
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 3.4e-59 232.6 214 56.5
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 5.8e-59 231.9 237 52.3
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 6.4e-58 228.4 213 54.5
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 6.4e-58 228.4 251 51.4
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 4.2e-57 225.7 214 54.2
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.2e-56 224.2 222 52.7
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-56 224.2 213 52.6
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 3.5e-56 222.6 223 54.3
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.3e-55 219.9 199 55.3
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 9.6e-54 214.5 215 51.2
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.4e-52 210.7 221 52.9
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 1.8e-52 210.3 218 48.2
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 5.3e-52 208.8 215 48.8
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 1.5e-51 207.2 220 47.7
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 1.5e-51 207.2 220 47.7
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 1.5e-51 207.2 215 49.3
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.6e-51 206.5 209 52.6
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 4.5e-51 205.7 215 49.8
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.8e-51 205.3 259 45.6
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 7.6e-51 204.9 210 50.0
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.3e-50 204.1 215 47.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 1.7e-50 203.8 215 49.3
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 1.4e-49 200.7 215 49.3
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 2.4e-49 199.9 220 49.5
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 2.4e-49 199.9 255 47.5
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 3.2e-49 199.5 211 49.3
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 3.2e-49 199.5 219 50.7
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 4.2e-49 199.1 187 52.9
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 3.0e-47 193.0 175 60.0
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 8.7e-47 191.4 217 47.9
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 3.3e-46 189.5 219 49.3
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 4.3e-46 189.1 217 46.5
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 3.8e-42 176.0 398 33.4
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 6.5e-42 175.3 244 41.8
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 8.4e-42 174.9 210 44.8
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.4e-41 174.1 211 44.1
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 1.9e-38 163.7 231 38.5
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 4.3e-38 162.5 205 41.0
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 7.4e-38 161.8 153 59.5
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 1.8e-36 157.1 133 62.4
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 5.3e-36 155.6 218 38.5
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 2.2e-34 150.2 175 49.1
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 3.2e-33 146.4 162 45.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 7.2e-33 145.2 152 55.9
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.2e-32 144.4 149 51.7
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 6.1e-32 142.1 181 45.9
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 2.2e-26 123.6 166 42.2
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.6e-22 110.2 96 51.0
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.2e-19 101.3 203 31.5
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 4.5e-11 72.8 51 60.8
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 5.5e-09 65.9 95 41.1
Cpa.g.sc97.97 Carica papaya HOM05D000868 ORTHO05D000711 6.1e-08 62.4 117 35.9
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 8.0e-08 62.0 47 59.6
AL1G23580 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 1.0e-07 61.6 114 29.8
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 2.0e-06 57.4 95 33.7
AL1G23570 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 2.6e-06 57.0 90 32.2
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 2.6e-06 57.0 123 26.0
TWI38G0132 Tripterygium wilfordii HOM05D000868 ORTHO05D000711 3.3e-06 56.6 93 39.8


User provided reference genes

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