Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 2.4e-205 718.8 401 100.0
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.6e-193 679.5 402 92.8
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 9.3e-186 653.7 401 92.5
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 7.2e-162 574.3 399 81.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 2.3e-144 516.2 370 80.5
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.3e-126 457.2 402 68.2
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 2.0e-124 449.9 332 78.3
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 8.7e-83 311.6 429 49.4
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 8.1e-81 305.1 426 47.7
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.3e-78 297.7 398 49.7
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 4.2e-77 292.7 427 46.8
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 2.1e-76 290.4 421 47.0
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.3e-74 282.7 408 50.0
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 8.2e-73 278.5 447 44.7
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.1e-72 278.1 426 46.7
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 3.4e-71 273.1 424 45.0
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 5.5e-69 265.8 423 46.3
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 2.1e-68 263.8 422 46.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 4.6e-68 262.7 450 44.4
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.8e-67 260.8 400 44.2
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 8.7e-67 258.5 419 46.8
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.1e-66 258.1 432 44.0
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.1e-66 258.1 408 44.9
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.5e-66 257.7 444 43.9
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 5.7e-66 255.8 422 45.0
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 6.3e-65 252.3 418 45.7
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.4e-64 251.1 425 43.3
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.4e-64 250.4 427 43.3
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 3.4e-63 246.5 416 43.8
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 3.4e-63 246.5 415 44.6
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 4.5e-63 246.1 417 45.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.9e-62 243.4 422 45.0
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 2.9e-62 243.4 430 45.3
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 5.0e-62 242.7 431 44.1
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.1e-61 241.5 439 44.0
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.1e-61 241.5 385 44.2
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 1.9e-61 240.7 414 44.0
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 7.2e-61 238.8 375 46.7
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 9.4e-61 238.4 431 43.4
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 9.4e-61 238.4 393 44.0
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 9.4e-61 238.4 428 43.7
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.2e-60 238.0 500 38.2
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 3.6e-60 236.5 416 43.3
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 6.1e-60 235.7 398 44.2
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.0e-59 235.0 405 43.7
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 1.0e-59 235.0 430 44.2
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.4e-59 234.6 429 42.7
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 8.8e-59 231.9 481 37.4
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 1.5e-58 231.1 412 43.7
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.5e-58 231.1 354 46.0
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.5e-58 231.1 399 42.6
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 2.0e-58 230.7 418 43.8
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 2.6e-58 230.3 431 44.1
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 3.3e-58 229.9 293 51.2
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 4.4e-58 229.6 434 40.6
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 3.7e-57 226.5 403 43.7
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 8.2e-57 225.3 401 42.1
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 6.9e-56 222.2 401 43.4
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.2e-55 221.5 408 40.7
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 1.5e-55 221.1 408 42.6
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 2.6e-55 220.3 351 47.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.5e-55 219.5 423 41.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 5.9e-55 219.2 424 39.6
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.7e-54 217.6 422 41.9
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.2e-54 217.2 422 42.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 8.5e-54 215.3 190 63.7
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.4e-53 214.5 424 42.5
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.9e-53 214.2 437 38.9
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.9e-53 214.2 212 58.0
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 4.2e-53 213.0 438 38.4
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.1e-52 210.7 165 64.8
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.4e-51 208.0 365 41.6
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 2.3e-51 207.2 369 42.5
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 5.2e-51 206.1 240 53.3
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.1e-50 204.9 307 47.6
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 2.0e-50 204.1 426 40.6
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.0e-50 204.1 348 42.2
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 3.3e-50 203.4 274 48.2
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 7.4e-50 202.2 326 44.2
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 7.4e-50 202.2 246 51.2
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 7.4e-50 202.2 340 44.1
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 2.2e-49 200.7 249 49.8
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 6.3e-49 199.1 436 39.2
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.8e-48 197.6 420 40.0
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 5.3e-48 196.1 284 45.8
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.2e-47 194.9 390 42.6
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 2.6e-47 193.7 378 39.9
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 3.5e-47 193.4 444 39.4
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 4.5e-47 193.0 409 40.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 7.7e-47 192.2 262 50.0
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 2.2e-46 190.7 438 38.6
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 2.9e-46 190.3 330 44.5
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 2.9e-46 190.3 291 46.7
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.5e-45 188.0 344 41.0
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 2.5e-45 187.2 413 39.7
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.2e-45 186.8 243 49.4
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.2e-45 186.8 281 45.6
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 7.2e-45 185.7 285 44.2
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 2.1e-44 184.1 303 46.5
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.7e-44 183.0 260 48.5
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 8.0e-44 182.2 478 36.4
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 7.5e-42 175.6 388 36.9
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.3e-41 174.9 442 37.8
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.8e-40 171.0 448 36.2
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 1.0e-38 165.2 421 35.9
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 2.2e-38 164.1 433 37.4
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.9e-37 161.0 155 58.1
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.5e-37 160.6 310 41.3
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 9.4e-37 158.7 470 35.3
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.4e-32 144.8 401 37.4
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.7e-31 140.6 223 42.6
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 2.3e-30 137.5 224 42.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.2e-29 133.7 253 43.5
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.1e-28 131.0 182 47.3
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.8e-28 130.6 233 41.6
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.4e-27 128.3 231 42.0
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 2.6e-26 124.0 309 34.6
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.3e-25 121.7 196 46.4
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.3e-25 121.7 110 54.5
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.4e-24 118.2 203 38.9
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.4e-24 117.5 92 66.3
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.2e-23 115.2 421 31.8
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 2.3e-22 110.9 111 53.2
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 5.0e-22 109.8 380 34.7
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 1.1e-13 82.0 197 39.1
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.2e-12 78.6 49 73.5
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 2.8e-12 77.4 133 37.6
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 3.1e-11 73.9 66 59.1
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 4.9e-09 66.6 136 34.6


User provided reference genes

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