Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g026740 Solanum pennellii HOM05D002077 ORTHO05D000818 3.5e-28 128.3 103 100.0
Solyc03g096620.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.9e-22 108.6 54 92.6
PGSC0003DMG401014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.0e-15 85.9 58 74.1
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 1.7e-14 82.8 58 67.2
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 4.9e-14 81.3 51 68.6
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 6.4e-14 80.9 58 70.7
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 8.4e-14 80.5 58 65.5
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.9e-13 79.3 58 63.8
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.9e-13 79.3 58 67.2
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.9e-13 79.3 58 67.2
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 3.2e-13 78.6 58 63.8
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.2e-13 78.2 48 70.8
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 4.2e-13 78.2 58 60.3
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 5.4e-13 77.8 58 63.8
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 5.4e-13 77.8 48 70.8
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 5.4e-13 77.8 58 67.2
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 5.4e-13 77.8 58 67.2
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 5.4e-13 77.8 58 67.2
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 9.3e-13 77.0 48 66.7
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 1.2e-12 76.6 58 62.1
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 1.2e-12 76.6 58 62.1
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 2.1e-12 75.9 58 62.1
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.1e-12 75.9 48 68.8
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.1e-12 75.9 48 68.8
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.1e-12 75.9 48 68.8
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 3.5e-12 75.1 48 66.7
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 4.6e-12 74.7 58 58.6
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 6.0e-12 74.3 48 66.7
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.0e-12 74.3 48 64.6
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 7.8e-12 73.9 48 62.5
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 7.8e-12 73.9 51 64.7
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 7.8e-12 73.9 48 64.6
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.0e-11 73.6 51 58.8
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.0e-11 73.6 58 58.6
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 1.0e-11 73.6 48 64.6
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.3e-11 73.2 48 64.6
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.3e-11 73.2 58 58.6
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.3e-11 73.2 58 62.1
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 1.3e-11 73.2 58 58.6
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.7e-11 72.8 48 62.5
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.7e-11 72.8 58 60.3
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.7e-11 72.8 58 58.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 1.7e-11 72.8 58 58.6
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.7e-11 72.8 48 64.6
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 1.7e-11 72.8 58 58.6
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.3e-11 72.4 55 58.2
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.3e-11 72.4 48 66.7
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 3.0e-11 72.0 58 55.2
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 5.1e-11 71.2 51 56.9
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 5.1e-11 71.2 51 56.9
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 5.1e-11 71.2 51 56.9
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 5.1e-11 71.2 51 56.9
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 5.1e-11 71.2 51 56.9
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 6.6e-11 70.9 48 62.5
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 6.6e-11 70.9 58 56.9
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 8.7e-11 70.5 58 56.9
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 8.7e-11 70.5 48 60.4
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 8.7e-11 70.5 48 60.4
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 8.7e-11 70.5 58 56.9
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 8.7e-11 70.5 48 60.4
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 1.1e-10 70.1 57 57.9
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 1.5e-10 69.7 48 60.4
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 1.9e-10 69.3 48 58.3
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.9e-10 69.3 53 56.6
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 1.9e-10 69.3 48 60.4
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 2.5e-10 68.9 57 54.4
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 2.5e-10 68.9 51 58.8
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 3.3e-10 68.6 58 53.4
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 4.3e-10 68.2 51 56.9
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 5.6e-10 67.8 58 53.4
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 7.3e-10 67.4 59 55.9
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 7.3e-10 67.4 57 50.9
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 7.3e-10 67.4 59 57.6
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 9.6e-10 67.0 58 55.2
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 9.6e-10 67.0 58 56.9
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 1.3e-09 66.6 57 52.6
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 1.3e-09 66.6 57 52.6
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.1e-09 65.9 58 51.7
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 2.1e-09 65.9 58 55.2
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 2.8e-09 65.5 48 58.3
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 3.6e-09 65.1 58 51.7
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 6.2e-09 64.3 48 62.5
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 8.1e-09 63.9 58 56.9
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 1.1e-08 63.5 48 56.2
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.1e-08 63.5 48 56.2
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.4e-08 63.2 51 54.9
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 1.4e-08 63.2 48 52.1
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.8e-08 62.8 57 50.9
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 2.4e-08 62.4 51 51.0
PGSC0003DMG400043692 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.4e-08 62.4 58 56.9
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.4e-08 62.4 58 53.4
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 4.0e-08 61.6 48 50.0
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.0e-08 61.6 48 52.1
PGSC0003DMG400016751 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.0e-08 61.6 58 55.2
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 6.9e-08 60.8 58 55.2
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 6.9e-08 60.8 58 56.9
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.5e-07 59.7 58 51.7
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 2.0e-07 59.3 49 49.0
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.6e-07 58.9 49 51.0
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.5e-07 58.2 58 51.7
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 5.8e-07 57.8 52 51.9
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 5.8e-07 57.8 48 45.8
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 7.6e-07 57.4 48 45.8
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.9e-07 57.0 49 51.0
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.9e-07 57.0 49 51.0
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.3e-06 56.6 49 44.9
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 6.4e-06 54.3 50 54.0
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 8.4e-06 53.9 48 47.9
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 8.4e-06 53.9 58 46.6
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 8.4e-06 53.9 58 46.6


User provided reference genes

Program Settings