Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 9.8e-166 586.6 279 100.0
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.6e-102 375.9 309 63.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.4e-102 375.6 309 64.1
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 6.4e-101 371.3 309 64.1
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.7e-98 360.9 309 61.8
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 4.3e-97 358.6 309 61.5
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-96 357.1 309 60.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.5e-94 348.6 309 59.9
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-93 346.7 307 59.9
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.9e-87 324.7 293 59.0
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.6e-86 322.8 312 55.4
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.8e-80 302.0 309 54.0
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.3e-72 277.3 202 69.8
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 6.7e-66 255.0 305 46.2
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.6e-62 243.8 306 44.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 5.9e-62 241.9 308 43.8
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 5.0e-61 238.8 179 64.8
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-60 237.7 310 44.5
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 2.3e-58 229.9 309 42.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 9.7e-57 224.6 309 42.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 4.8e-56 222.2 299 42.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.1e-55 219.2 298 41.9
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.0e-54 216.9 307 40.7
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 5.9e-54 215.3 217 51.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 5.9e-54 215.3 309 41.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.9e-53 213.0 280 42.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 8.5e-53 211.5 298 40.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.1e-52 211.1 313 39.9
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 9.4e-52 208.0 213 48.8
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.2e-51 207.6 224 48.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 3.6e-51 206.1 226 45.6
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.7e-51 205.7 299 40.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.8e-50 203.8 313 38.7
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.8e-50 203.8 224 49.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.0e-50 202.6 226 44.2
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 4.0e-50 202.6 317 37.9
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.8e-50 201.8 224 49.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.2e-49 201.1 223 45.3
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.5e-49 200.7 193 51.3
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 3.4e-49 199.5 209 48.3
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 5.7e-49 198.7 226 46.5
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 7.5e-49 198.4 219 47.9
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.8e-49 198.0 311 38.6
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.7e-48 197.2 232 46.6
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.8e-48 195.7 310 39.0
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 5.4e-47 192.2 231 44.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 7.0e-47 191.8 226 46.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.6e-46 190.7 312 37.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.7e-46 189.9 231 43.3
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.5e-46 189.1 223 45.3
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.9e-46 188.7 279 40.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.0e-45 188.0 199 48.7
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-45 187.6 209 48.3
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.7e-45 187.2 225 44.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.9e-45 186.4 245 41.2
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.8e-45 186.0 298 38.6
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 5.0e-45 185.7 222 44.1
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 6.5e-45 185.3 224 42.4
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 8.6e-45 184.9 226 44.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.1e-44 184.5 222 44.1
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.5e-44 184.1 217 45.2
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.5e-44 183.3 218 45.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.2e-44 183.0 226 42.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 3.2e-44 183.0 178 52.2
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.2e-44 181.8 208 46.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 9.5e-44 181.4 221 45.2
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.1e-43 180.3 221 45.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.1e-43 180.3 226 44.2
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 6.1e-43 178.7 224 43.3
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.0e-42 176.4 210 45.2
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.0e-42 176.0 226 43.8
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.2e-42 175.6 224 44.2
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 5.2e-42 175.6 222 41.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.8e-42 175.3 225 44.9
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.2e-41 174.5 266 38.3
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.2e-41 174.5 244 42.2
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.0e-41 173.7 200 45.5
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.0e-41 173.7 226 43.8
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 2.6e-41 173.3 224 43.8
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.4e-41 172.9 311 38.3
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.4e-41 172.6 226 44.2
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.4e-41 172.6 309 36.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.3e-40 171.0 244 38.9
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.2e-40 170.2 217 46.1
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.8e-40 169.9 226 44.7
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.7e-40 169.5 225 40.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.7e-40 169.5 225 40.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.7e-40 169.5 225 40.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 4.9e-40 169.1 225 39.6
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.1e-39 167.9 210 44.3
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-39 166.8 209 40.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 5.4e-39 165.6 208 40.9
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 7.0e-39 165.2 286 35.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.0e-38 163.7 230 40.9
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.5e-38 162.9 290 35.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.9e-38 162.2 261 37.2
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.9e-38 162.2 165 55.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.9e-38 162.2 226 39.4
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-37 161.4 204 40.7
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.0e-37 161.4 218 39.0
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.0e-37 161.4 207 41.5
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.7e-37 160.6 237 38.4
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.7e-37 160.6 222 41.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.7e-37 160.6 230 40.0
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 2.3e-37 160.2 209 41.6
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.0e-37 159.1 219 39.3
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 5.0e-37 159.1 183 47.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.6e-37 158.7 223 39.5
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.5e-36 157.5 225 41.8
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 3.3e-36 156.4 216 38.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 3.3e-36 156.4 216 38.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 4.3e-36 156.0 313 32.9
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.3e-36 155.2 224 37.1
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 9.5e-36 154.8 210 41.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.2e-35 154.5 218 42.7
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-35 154.5 82 90.2
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 3.6e-35 152.9 208 39.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 4.7e-35 152.5 210 41.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-34 151.4 218 42.2
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.4e-34 151.0 210 40.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.8e-34 150.6 273 35.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 2.3e-34 150.2 216 37.5
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 2.3e-34 150.2 216 37.5
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.3e-34 150.2 179 44.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 4.0e-34 149.4 214 40.2
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.0e-34 149.4 187 44.4
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 5.2e-34 149.1 213 40.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 6.8e-34 148.7 213 39.4
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 8.9e-34 148.3 227 38.8
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.9e-34 148.3 168 45.8
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.0e-33 147.1 215 39.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-33 147.1 222 40.5
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.6e-33 146.7 227 37.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 7.5e-33 145.2 208 38.9
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.9e-32 143.3 288 33.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.3e-32 141.7 246 32.9
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.8e-31 140.6 261 34.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.8e-31 140.6 230 37.8
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.1e-31 139.4 201 40.3
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 9.2e-31 138.3 248 32.3
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-30 137.9 231 39.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 7.8e-30 135.2 230 39.1
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.0e-29 133.3 194 41.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.9e-29 132.9 199 35.7
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.6e-29 132.1 262 34.4
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 9.5e-28 128.3 121 57.0
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 8.0e-27 125.2 170 47.1
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.1e-26 124.8 217 33.6
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.3e-26 123.6 233 33.5
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 3.1e-26 123.2 164 40.9
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-23 114.8 154 37.7
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.9e-23 114.0 101 63.4
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.4e-23 113.6 193 35.8
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.1e-23 112.8 109 47.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 4.1e-23 112.8 219 34.2
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.6e-22 109.4 236 31.8
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.6e-22 109.4 110 48.2
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 6.0e-22 109.0 176 35.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 7.8e-22 108.6 194 36.6
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.1e-20 104.8 178 36.5
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.5e-20 104.4 308 25.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.3e-20 103.2 248 30.2
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.6e-19 99.8 76 63.2
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 8.1e-19 98.6 97 52.6
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.8e-18 97.4 116 43.1
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.4e-17 92.8 102 47.1
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 9.9e-17 91.7 165 35.2
Sopen09g024770 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-16 90.9 49 87.8
Sopen11g010220 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-16 90.9 49 87.8
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 6.4e-16 89.0 321 24.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.6e-14 84.3 139 33.8
Sopen09g024500 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-14 84.3 90 54.4
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 6.0e-14 82.4 137 36.5
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 6.0e-14 82.4 80 48.8
Sopen02g010600 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-14 82.0 43 88.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-13 81.6 189 29.6
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 3.0e-13 80.1 118 37.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 8.6e-13 78.6 190 28.9
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-11 74.7 47 74.5
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 4.7e-11 72.8 62 50.0
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-09 66.2 106 33.0
Sopen12g026010 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 64.7 34 85.3
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.4e-07 59.3 45 57.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 5.4e-07 59.3 71 46.5


User provided reference genes

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