Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 8.7e-84 313.5 152 100.0
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 8.7e-84 313.5 152 100.0
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.6e-83 310.1 152 98.7
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.4e-81 306.2 152 97.4
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.6e-80 302.0 152 96.1
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 7.6e-80 300.4 152 94.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.2e-79 298.9 152 94.7
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 94.7
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.4e-78 295.4 151 95.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 92.8
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 93.4
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 5.5e-78 294.3 148 96.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 147 95.2
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 147 95.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.2e-77 293.1 144 98.6
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 92.8
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 93.4
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 92.1
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 93.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 4.6e-77 291.2 150 92.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 92.1
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 4.6e-77 291.2 144 97.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 6.0e-77 290.8 147 94.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 90.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.9e-77 290.4 147 93.9
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.9e-77 290.4 147 93.9
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 90.8
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 90.8
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 91.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 91.4
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 92.0
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.3e-76 289.7 147 93.9
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-76 289.7 146 93.2
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-76 289.7 146 93.2
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 90.8
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 93.9
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 90.8
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 91.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 90.8
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 90.8
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 90.8
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 3.9e-76 288.1 147 93.2
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 3.9e-76 288.1 147 93.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 147 92.5
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.9e-76 288.1 147 93.2
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.8
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.9e-76 288.1 150 92.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 90.8
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 92.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 91.8
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 6.7e-76 287.3 152 90.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 8.7e-76 287.0 147 92.5
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.1e-75 286.6 147 92.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 147 91.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 89.5
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.9e-75 285.8 147 91.8
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-75 285.4 144 94.4
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 93.2
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 90.1
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 91.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.6e-74 282.7 150 91.3
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 89.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 89.5
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 2.8e-74 282.0 147 91.8
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 2.8e-74 282.0 147 90.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.7e-74 281.6 147 90.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 4.8e-74 281.2 149 90.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 149 90.6
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 89.8
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 150 90.7
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 6.2e-74 280.8 151 90.1
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 6.2e-74 280.8 147 89.8
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.1e-74 280.4 152 89.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 8.1e-74 280.4 147 90.5
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 8.1e-74 280.4 147 90.5
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.1e-73 280.0 153 88.9
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.1e-73 280.0 147 89.1
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.1e-73 280.0 143 93.0
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-73 279.3 147 91.2
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.8e-73 279.3 147 91.2
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.4e-73 278.9 144 91.7
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 149 89.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 3.1e-73 278.5 149 89.9
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 4.0e-73 278.1 150 88.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.8
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 9.0e-73 276.9 147 90.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 9.0e-73 276.9 151 86.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 9.0e-73 276.9 151 86.8
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 89.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.6e-72 275.4 147 89.1
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.4e-72 275.0 152 87.5
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 3.4e-72 275.0 143 90.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.3e-71 273.1 143 90.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.7e-71 272.7 145 87.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.2e-71 272.3 134 97.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.9e-71 271.9 132 99.2
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.9e-71 271.2 157 85.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 9.3e-70 266.9 132 96.2
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.6e-69 266.2 140 90.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.6e-69 266.2 149 87.2
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 6.0e-69 264.2 143 88.1
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 7.9e-69 263.8 132 95.5
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.1e-67 260.0 134 92.5
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.5e-67 259.6 132 93.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 9.6e-67 256.9 132 92.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.6e-66 256.1 127 95.3
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.6e-66 256.1 134 90.3
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 8.2e-66 253.8 134 92.5
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.4e-65 253.1 130 91.5
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.4e-65 253.1 130 91.5
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 90.9
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 4.1e-65 251.5 132 90.2
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 5.3e-65 251.1 127 92.9
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.2e-64 250.0 152 81.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.5e-64 249.6 127 92.9
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.6e-64 248.8 127 91.3
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 2.6e-64 248.8 131 90.1
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.4e-64 248.4 149 81.2
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.4e-64 248.4 149 81.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 7.6e-64 247.3 144 84.0
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.0e-63 246.9 127 92.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.7e-63 246.1 147 81.6
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.7e-63 246.1 128 89.8
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 88.6
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 3.8e-63 245.0 141 81.6
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.1e-62 243.4 142 83.1
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.7e-61 238.8 144 75.0
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.0e-60 236.9 145 73.8
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 9.7e-59 230.3 151 72.8
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.5e-56 223.0 157 72.0
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 7.2e-54 214.2 186 60.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.1e-51 206.8 116 83.6
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.1e-51 206.8 103 98.1
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.2e-50 202.6 144 70.8
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 3.7e-50 201.8 119 79.8
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.2e-48 196.8 103 92.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 91.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 8.5e-47 190.7 116 75.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.7e-43 177.9 87 94.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.4e-41 172.6 115 78.3
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.5e-38 162.5 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 8.0e-37 157.5 78 91.0
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.8e-36 156.4 81 92.6
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.6e-35 152.5 142 59.9
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.0e-32 142.9 73 94.5
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 8.0e-29 131.0 69 82.6
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.8e-28 127.5 71 87.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.5e-27 124.4 71 85.9
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.7e-26 122.1 71 84.5
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.1e-25 118.6 76 76.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 2.9e-15 85.9 45 91.1
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.3e-14 82.4 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 8.0e-13 77.8 84 52.4


User provided reference genes

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