Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 4105.4 2150 100.0
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 4055.8 2150 98.7
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 3538.8 2151 85.4
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 3404.4 2152 82.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 2956.8 1882 82.3
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 2442.9 1460 87.1
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2407.5 2168 58.9
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2403.6 2170 58.9
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2330.1 2170 57.6
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2294.2 2187 56.5
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 2256.9 2163 55.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2236.1 2183 55.2
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2231.4 2266 54.7
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2196.8 2172 54.5
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2195.6 2174 54.2
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2176.7 2170 54.0
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 2130.1 2183 53.0
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2124.4 2215 52.3
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 2120.1 2165 53.9
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 2103.6 2172 52.7
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 2101.6 2162 52.8
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2085.8 2209 52.0
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 2084.7 2180 51.8
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2082.4 2168 52.6
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2074.3 2198 51.7
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2073.9 2168 52.4
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2068.1 2175 51.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 2064.7 2177 51.6
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2060.0 2174 50.9
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2059.6 2186 51.5
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2033.5 2171 51.7
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2023.4 2177 50.4
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 2018.0 2200 50.6
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2011.5 2177 50.3
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 2010.3 2200 50.5
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 2004.2 2197 51.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1992.2 2229 50.1
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1986.1 2298 49.2
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1981.5 2172 50.0
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1980.3 2175 49.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1978.4 2174 50.0
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1972.2 2289 48.9
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1954.1 2177 49.2
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1951.8 2206 49.5
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1949.9 2171 49.2
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1946.0 2173 49.0
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1942.2 2172 48.6
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1941.4 2165 49.1
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1938.7 2174 49.0
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1936.8 2182 49.4
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1936.8 2179 48.9
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1934.5 2172 49.2
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1930.2 2174 49.1
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1927.9 2188 49.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1927.5 2158 49.3
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1925.6 2178 49.6
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1919.8 2172 48.1
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1914.8 2179 48.4
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1864.4 2176 48.6
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1852.4 2187 47.7
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1840.5 2205 47.6
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1837.8 2208 48.0
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1835.5 2185 47.5
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1831.6 2238 46.4
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1827.8 2186 47.1
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1821.6 2205 47.3
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1791.2 1947 49.9
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1777.3 2246 45.7
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1739.9 2158 46.2
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1739.2 2243 44.7
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1732.6 2245 44.4
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1726.1 2245 44.1
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1723.0 2251 44.3
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1715.7 2173 46.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1714.9 2240 44.1
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1706.4 2240 44.2
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1700.6 2236 44.1
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1692.2 2250 43.9
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1669.4 2242 43.9
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1595.1 1953 45.5
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1564.3 2205 43.1
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1540.4 2330 40.5
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1522.3 2194 40.8
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1494.2 1814 47.2
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1489.9 1770 46.9
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1464.1 2189 40.1
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1450.3 1528 52.0
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1449.9 1867 46.2
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1431.0 1423 54.3
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1343.9 1699 45.7
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1315.1 1842 42.7
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1313.1 1842 42.5
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1307.7 1844 42.6
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1302.3 2187 39.0
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1298.9 1848 41.9
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1298.5 1370 51.6
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1295.8 1848 42.1
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 0.0e+00 1085.9 1071 55.9
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1081.2 626 89.3
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 1.4e-307 1060.8 1167 48.7
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 2.0e-282 977.2 986 53.8
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 1.2e-266 924.9 2223 30.9
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 8.4e-257 892.1 2235 31.3
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 3.5e-255 886.7 1212 42.7
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-254 884.8 1424 40.2
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.6e-246 855.9 723 62.2
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.3e-236 825.1 2172 29.8
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-233 815.5 822 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 6.7e-222 776.2 2113 28.1
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.2e-220 771.2 1137 39.1
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-211 741.5 849 49.4
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.5e-209 733.0 849 50.3
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 5.5e-208 729.9 2314 26.6
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 2.8e-196 691.0 854 45.4
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-185 655.2 801 49.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 2.9e-185 654.4 609 55.2
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.3e-176 624.4 633 54.5
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.9e-147 528.9 301 89.7
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 1.3e-145 522.7 500 54.2
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.6e-145 520.4 705 45.4
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 4.0e-134 484.6 563 48.1
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.3e-124 453.0 624 41.0
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-118 432.6 403 54.1
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 2.0e-117 429.1 396 56.6
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.9e-116 425.2 613 43.1
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.9e-116 424.5 771 36.6
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.9e-113 414.8 645 39.5
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 4.8e-111 407.9 360 58.1
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.2e-107 395.2 407 54.5
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 5.9e-101 374.4 876 32.2
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 2.2e-92 345.9 306 61.4
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 7.4e-88 330.9 390 46.7
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-84 319.7 507 40.6
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.2e-84 319.3 266 64.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.5e-80 306.6 362 43.4
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.0e-77 296.2 391 45.0
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 2.3e-73 282.7 220 67.7
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 4.8e-71 275.0 618 32.8
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.4e-70 273.5 232 62.9
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.4e-70 272.7 200 68.5
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 6.8e-65 254.6 306 42.5
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 8.8e-65 254.2 493 34.7
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 4.4e-64 251.9 364 43.1
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 6.6e-60 238.0 1075 24.7
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 1.6e-58 233.4 275 50.5
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.3e-57 229.6 335 43.9
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 2.4e-54 219.5 116 99.1
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 1.2e-53 217.2 127 85.8
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 1.1e-51 210.7 220 48.2
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 1.1e-51 210.7 220 48.2
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 3.4e-48 199.1 419 34.8
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 2.9e-47 196.1 405 32.6
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 3.5e-45 189.1 145 66.2
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 7.3e-43 181.4 225 45.8
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-35 156.8 94 86.2
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 7.6e-32 144.8 149 49.7
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 1.7e-31 143.7 236 37.7
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.6e-24 119.8 168 40.5
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 9.9e-24 117.9 1356 21.5
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.7e-23 117.1 168 40.5
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.8e-23 115.9 249 30.5
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 6.4e-23 115.2 209 37.3
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 4.6e-21 109.0 131 48.1
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 1.0e-20 107.8 144 36.8
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.6e-16 93.2 201 31.3
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 9.9e-16 91.3 916 19.9
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 1.6e-13 84.0 403 25.3
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 3.5e-13 82.8 58 70.7
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.1e-12 79.0 175 29.1
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 6.7e-12 78.6 251 31.1
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 6.7e-12 78.6 141 37.6
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 4.3e-11 75.9 86 47.7
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 1.6e-10 73.9 50 64.0
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 9.0e-09 68.2 55 60.0
Solyc07g040661.1 Solanum lycopersicum HOM05D003586 ORTHO05D051155 2.0e-08 67.0 61 52.5
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 9.9e-08 64.7 81 44.4
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.7e-07 63.9 55 54.5
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.7e-07 63.9 55 54.5
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 2.9e-07 63.2 120 30.8
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 2.4e-06 60.1 75 40.0
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 4.2e-06 59.3 54 57.4


User provided reference genes

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