Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 2.3e-145 518.8 253 100.0
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 4.2e-59 232.3 128 92.2
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 7.2e-59 231.5 128 92.2
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 7.8e-45 184.9 133 75.9
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 2.3e-41 173.3 130 70.8
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 9.8e-40 167.9 130 67.7
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 2.0e-37 160.2 130 66.9
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 1.1e-30 137.9 150 53.3
Sopen03g022620 Solanum pennellii HOM05D001081 ORTHO05D004708 1.6e-29 134.0 95 70.5
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 1.3e-28 131.0 154 48.7
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.3e-28 130.2 172 44.8
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 3.9e-28 129.4 171 44.4
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 9.5e-27 124.8 146 52.7
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 1.6e-26 124.0 130 50.8
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.4e-25 120.9 135 47.4
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 3.4e-24 116.3 136 48.5
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 3.4e-24 116.3 136 48.5
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 3.4e-24 116.3 152 48.0
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 5.8e-24 115.5 136 47.8
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.5e-24 115.2 136 48.5
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 7.5e-24 115.2 152 47.4
Hma1.2p1_0404F.1_g145360 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 9.9e-24 114.8 135 51.9
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 1.3e-23 114.4 130 49.2
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 2.9e-23 113.2 124 50.8
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 8.3e-23 111.7 130 47.7
HanXRQChr08g0225331 Helianthus annuus HOM05D001081 ORTHO05D004708 1.9e-22 110.5 138 45.7
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 2.4e-22 110.2 129 46.5
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 2.4e-22 110.2 129 46.5
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 7.1e-22 108.6 158 43.0
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 9.2e-22 108.2 130 46.2
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 9.2e-22 108.2 133 48.1
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.6e-21 107.5 104 48.1
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 1.6e-21 107.5 158 39.9
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 1.6e-21 107.5 139 45.3
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 3.5e-21 106.3 150 42.0
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 4.6e-21 105.9 140 47.1
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 4.6e-21 105.9 137 46.0
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 6.0e-21 105.5 168 39.9
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 6.0e-21 105.5 134 47.8
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 7.8e-21 105.1 303 30.7
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 1.3e-20 104.4 144 45.1
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 2.3e-20 103.6 206 35.0
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 3.9e-20 102.8 165 37.6
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 3.9e-20 102.8 135 45.2
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 6.6e-20 102.1 120 49.2
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 8.6e-20 101.7 129 46.5
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 8.6e-20 101.7 132 45.5
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 7.3e-19 98.6 127 44.1
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 7.3e-19 98.6 297 29.0
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 7.3e-19 98.6 133 44.4
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 9.5e-19 98.2 158 40.5
HanXRQChr08g0225281 Helianthus annuus HOM05D001081 ORTHO05D004708 1.2e-18 97.8 165 38.8
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 3.6e-18 96.3 147 36.7
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.1e-17 94.7 125 44.0
ECA233G5228 Erigeron canadensis HOM05D001081 ORTHO05D004708 1.1e-17 94.7 136 44.1
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 1.8e-17 94.0 127 42.5
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 1.8e-17 94.0 136 41.9
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 3.1e-17 93.2 139 39.6
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 3.1e-17 93.2 148 39.2
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 1.2e-16 91.3 145 38.6
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.2e-16 91.3 148 38.5
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 1.2e-16 91.3 129 42.6
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 2.0e-16 90.5 127 41.7
Solyc03g083160.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 2.6e-16 90.1 89 59.6
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 4.4e-16 89.4 139 41.7
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 4.4e-16 89.4 139 40.3
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.7e-15 87.4 131 42.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 1.7e-15 87.4 127 40.2
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 2.2e-15 87.0 135 40.7
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 2.2e-15 87.0 137 38.7
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 8.4e-15 85.1 128 39.8
Thecc.03G196700 Theobroma cacao HOM05D001081 ORTHO05D004708 8.4e-15 85.1 108 49.1
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 1.4e-14 84.3 141 39.0
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 1.4e-14 84.3 142 39.4
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 1.4e-14 84.3 141 39.0
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 3.2e-14 83.2 127 38.6
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 3.2e-14 83.2 127 38.6
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 4.1e-14 82.8 141 39.0
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 4.1e-14 82.8 137 38.7
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 7.1e-14 82.0 123 42.3
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 7.1e-14 82.0 145 40.0
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 9.2e-14 81.6 141 39.0
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 9.2e-14 81.6 143 37.8
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 9.2e-14 81.6 118 41.5
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 2.7e-13 80.1 64 60.9
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 6.0e-13 79.0 133 39.8
Sopen03g022910 Solanum pennellii HOM05D001081 ORTHO05D004708 1.0e-12 78.2 83 56.6
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.3e-12 77.0 106 42.5
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 2.3e-12 77.0 249 27.3
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 8.7e-12 75.1 133 36.1
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.5e-11 74.3 54 64.8
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 1.5e-11 74.3 116 42.2
Eucgr.K00385 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.3e-11 73.2 83 45.8
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 3.3e-11 73.2 54 64.8
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.3e-11 72.8 46 71.7
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 4.3e-11 72.8 104 44.2
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 4.3e-11 72.8 46 71.7
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 5.6e-11 72.4 48 66.7
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 7.3e-11 72.0 108 38.0
SEGI_37251 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 9.6e-11 71.6 108 39.8
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 1.2e-10 71.2 126 37.3
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-10 71.2 47 72.3
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-10 71.2 47 72.3
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-10 71.2 47 72.3
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-10 71.2 47 72.3
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-10 71.2 130 37.7
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 1.6e-10 70.9 92 41.3
Sopen03g022630 Solanum pennellii HOM05D001081 ORTHO05D003320 1.6e-10 70.9 130 40.0
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 2.8e-10 70.1 47 70.2
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 3.6e-10 69.7 66 53.0
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.4e-09 67.8 45 66.7
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 1.4e-09 67.8 48 70.8
BcaNung01800 Brassica carinata HOM05D001081 ORTHO05D004708 2.4e-09 67.0 99 38.4
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 4.0e-09 66.2 47 66.0
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 5.2e-09 65.9 45 66.7
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 6.9e-09 65.5 47 63.8
Duzib205G2059 Durio zibethinus HOM05D001081 ORTHO05D004708 1.5e-08 64.3 65 53.8
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 4.4e-08 62.8 87 40.2
Sopen03g022960 Solanum pennellii HOM05D001081 ORTHO05D003320 4.4e-08 62.8 29 100.0
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 9.9e-08 61.6 45 60.0
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 1.7e-07 60.8 51 58.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.2e-07 60.5 64 42.2
Sabra11G0071800 Salix brachista HOM05D001060 ORTHO05D004708 3.8e-07 59.7 74 43.2
EL10Ac1g00254 Beta vulgaris HOM05D001081 ORTHO05D000320 8.4e-07 58.5 60 46.7
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 1.1e-06 58.2 44 61.4


User provided reference genes

Program Settings