Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.3e-45 183.7 92 100.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.3e-45 183.7 92 100.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-44 181.8 92 98.9
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 3.8e-42 174.5 92 95.7
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 9.1e-36 153.3 94 84.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.1e-32 142.1 78 93.6
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.6e-32 141.4 83 83.1
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.0e-31 139.8 83 83.1
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.0e-31 139.8 84 83.3
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.4e-31 139.4 91 78.0
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.4e-31 139.4 87 79.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.4e-31 139.4 91 78.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.8e-31 139.0 91 78.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.8e-31 139.0 80 86.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.0e-31 138.3 82 82.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.2e-31 137.5 86 80.2
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.7e-31 137.1 88 78.4
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.8e-31 136.7 86 79.1
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 8.8e-31 136.7 86 80.2
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.2e-30 136.3 86 80.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-30 136.3 84 79.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.2e-30 136.3 87 77.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.2e-30 136.3 84 82.1
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.5e-30 136.0 89 75.3
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.6e-30 135.2 86 79.1
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.3e-30 134.8 86 77.9
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 5.7e-30 134.0 82 80.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.7e-30 134.0 86 79.1
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 79.8
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 79.8
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 77.4
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 81.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 7.5e-30 133.7 86 79.1
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 81.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 77.4
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 9.7e-30 133.3 82 81.7
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 9.7e-30 133.3 84 81.0
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.3e-29 132.9 88 73.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.7e-29 132.5 82 78.0
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.7e-29 132.5 84 79.8
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.2e-29 132.1 86 77.9
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.8e-29 131.7 87 74.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.7e-29 131.3 80 81.2
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 4.8e-29 131.0 79 82.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 4.8e-29 131.0 80 81.2
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 4.8e-29 131.0 80 81.2
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 4.8e-29 131.0 82 78.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.8e-29 131.0 83 78.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.3e-29 130.6 86 77.9
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.3e-29 130.6 86 77.9
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.3e-29 130.6 86 77.9
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 8.2e-29 130.2 82 80.5
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 8.2e-29 130.2 82 76.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.1e-28 129.8 84 77.4
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.4e-28 129.4 90 73.3
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.4e-28 129.4 82 78.0
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.8e-28 129.0 87 74.7
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.8e-28 129.0 84 79.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.4e-28 128.6 82 76.8
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-28 128.6 80 80.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.4e-28 128.6 80 80.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.1e-28 128.3 86 75.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 3.1e-28 128.3 80 77.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.1e-28 127.9 82 75.6
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 4.1e-28 127.9 82 76.8
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.1e-28 127.9 91 71.4
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.1e-28 127.9 91 71.4
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.1e-28 127.9 88 71.6
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 7.0e-28 127.1 82 76.8
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 7.0e-28 127.1 82 75.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 7.0e-28 127.1 82 75.6
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 9.1e-28 126.7 86 73.3
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.2e-27 126.3 80 77.5
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.6e-27 125.9 82 76.8
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.6e-27 125.9 84 73.8
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.6e-27 125.9 86 75.6
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.0e-27 125.6 86 73.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.7e-27 125.2 83 74.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 3.5e-27 124.8 79 82.3
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.5e-27 124.8 86 73.3
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 3.5e-27 124.8 75 84.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.5e-27 124.8 80 75.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 4.5e-27 124.4 82 75.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 4.5e-27 124.4 82 75.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.5e-27 124.4 80 78.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.9e-27 124.0 89 69.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 5.9e-27 124.0 88 71.6
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 5.9e-27 124.0 82 74.4
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.9e-27 124.0 69 94.2
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.9e-27 124.0 79 82.3
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.9e-27 124.0 79 82.3
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.9e-27 124.0 79 82.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 7.7e-27 123.6 88 70.5
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 7.7e-27 123.6 89 71.9
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 7.7e-27 123.6 79 79.7
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 73.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 73.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 73.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 73.8
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 75.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-26 122.9 82 74.4
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-26 122.9 82 74.4
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.3e-26 122.9 82 74.4
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.3e-26 122.9 83 79.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-26 122.5 80 73.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 122.5 80 73.8
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 122.5 80 73.8
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.7e-26 122.5 86 75.6
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.2e-26 122.1 89 68.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.2e-26 122.1 79 82.3
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.9e-26 121.7 80 76.2
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 5.0e-26 120.9 91 69.2
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 5.0e-26 120.9 80 80.0
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.1e-25 119.8 79 77.2
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.9e-25 119.0 90 70.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.2e-25 117.1 85 74.1
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 9.4e-25 116.7 79 72.2
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 9.4e-25 116.7 79 72.2
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 9.4e-25 116.7 79 72.2
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.1e-24 115.5 79 77.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.1e-24 115.5 75 77.3
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 6.1e-24 114.0 78 76.9
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 8.0e-24 113.6 79 77.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 8.0e-24 113.6 78 75.6
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.0e-23 113.2 85 71.8
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 6.8e-23 110.5 92 68.5
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 8.8e-23 110.2 80 65.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.4e-22 108.2 75 74.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 8.3e-21 103.6 74 75.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.4e-20 102.1 73 74.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.4e-20 100.9 79 69.6
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 9.1e-20 100.1 78 66.7
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 3.5e-19 98.2 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 5.9e-19 97.4 83 62.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.3e-18 96.3 56 82.1
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.2e-18 95.5 79 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 5.5e-17 90.9 75 65.3
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-15 85.9 80 60.0
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.8e-15 84.0 56 75.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.8e-15 84.0 56 75.0
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.2e-14 83.2 51 76.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-14 82.8 59 67.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.9e-13 77.8 88 44.3
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 9.2e-12 73.6 51 68.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.9e-09 65.9 40 80.0


User provided reference genes

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