Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.8e-66 255.8 125 100.0
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 1.5e-65 252.7 125 98.4
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 3.7e-64 248.1 125 96.0
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.6e-54 216.1 125 86.4
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.6e-54 216.1 125 82.4
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 7.2e-52 207.2 125 83.2
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 4.4e-41 171.4 127 67.7
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.7e-40 169.5 128 63.3
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 4.8e-40 167.9 125 64.0
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 7.0e-39 164.1 126 65.1
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 2.0e-38 162.5 131 61.8
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 3.5e-38 161.8 130 63.1
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 3.5e-38 161.8 131 63.4
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 4.5e-38 161.4 131 62.6
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 7.7e-38 160.6 134 59.7
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.0e-37 160.2 125 61.6
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 1.0e-37 160.2 130 63.1
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 1.3e-37 159.8 132 66.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.3e-37 159.8 133 61.7
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 1.3e-37 159.8 130 60.8
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.7e-37 159.5 127 62.2
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 2.3e-37 159.1 131 62.6
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.9e-37 158.7 131 61.1
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 5.0e-37 157.9 130 60.8
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 5.0e-37 157.9 134 59.7
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 5.0e-37 157.9 134 59.7
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 6.5e-37 157.5 130 60.0
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 1.5e-36 156.4 132 60.6
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.9e-36 156.0 130 60.0
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 3.3e-36 155.2 128 62.5
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.3e-36 155.2 135 57.8
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 3.3e-36 155.2 132 60.6
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 4.2e-36 154.8 128 60.9
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.5e-36 154.5 130 60.0
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 7.2e-36 154.1 123 62.6
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 9.5e-36 153.7 128 60.9
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 1.2e-35 153.3 131 60.3
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 1.6e-35 152.9 127 59.8
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 2.1e-35 152.5 133 57.1
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 2.1e-35 152.5 127 59.8
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 2.1e-35 152.5 127 59.8
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 4.7e-35 151.4 134 59.7
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 4.7e-35 151.4 130 60.8
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 6.1e-35 151.0 128 60.9
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 8.0e-35 150.6 130 59.2
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 8.0e-35 150.6 130 60.0
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.4e-34 149.8 129 58.9
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.8e-34 149.4 132 59.8
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 2.3e-34 149.1 126 60.3
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 2.3e-34 149.1 128 60.2
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 2.3e-34 149.1 126 60.3
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 3.0e-34 148.7 130 59.2
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 3.0e-34 148.7 124 58.1
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 4.0e-34 148.3 130 58.5
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 5.2e-34 147.9 128 58.6
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.2e-33 146.7 126 58.7
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.2e-33 146.7 130 60.8
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.5e-33 146.4 130 56.2
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 2.8e-32 142.1 134 57.5
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.1e-31 140.2 122 60.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.8e-31 139.4 125 59.2
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 5.4e-31 137.9 119 58.0
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 2.7e-30 135.6 126 57.1
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.3e-29 133.3 125 55.2
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.7e-29 132.9 125 59.2
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 2.9e-29 132.1 131 53.4
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 1.5e-28 129.8 78 71.8
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 2.5e-28 129.0 126 51.6
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 9.5e-28 127.1 123 52.8
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 6.1e-27 124.4 142 45.1
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.2e-26 121.3 130 49.2
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 3.1e-18 95.5 61 67.2
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 6.8e-18 94.4 118 49.2
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 5.8e-17 91.3 82 61.0
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.4e-15 86.7 156 34.6
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 3.2e-15 85.5 84 61.9
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 1.2e-14 83.6 85 48.2
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 6.6e-13 77.8 130 34.6
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.2e-11 73.6 48 62.5
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 8.1e-11 70.9 47 61.7


User provided reference genes

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