Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021930 Solanum pennellii HOM05D001874 ORTHO05D025166 6.2e-58 227.3 116 100.0
Solyc03g081200.3 Solanum lycopersicum HOM05D001874 ORTHO05D025166 3.8e-31 138.3 75 97.3
PGSC0003DMG400000561 Solanum tuberosum HOM05D001874 ORTHO05D002166 2.9e-23 112.1 87 70.1
Solyc03g097340.1 Solanum lycopersicum HOM05D001874 ORTHO05D002166 1.1e-22 110.2 69 81.2
Sopen03g028100 Solanum pennellii HOM05D001874 ORTHO05D002166 1.1e-22 110.2 69 81.2
PGSC0003DMG400026477 Solanum tuberosum HOM05D001874 ORTHO05D002166 9.4e-22 107.1 69 79.7
Nitab4.5_0000319g0010 Nicotiana tabacum HOM05D001874 ORTHO05D002166 1.4e-20 103.2 87 62.1
Nitab4.5_0015003g0010 Nicotiana tabacum HOM05D001874 ORTHO05D002166 1.4e-20 103.2 87 62.1
PGSC0003DMG400044039 Solanum tuberosum HOM05D001874 ORTHO05D002166 2.6e-19 99.0 86 59.3
Sopen03g021940 Solanum pennellii HOM05D001874 ORTHO05D002166 2.8e-18 95.5 86 58.1
Solyc03g081210.1 Solanum lycopersicum HOM05D001874 ORTHO05D002166 2.4e-17 92.4 86 57.0
Peaxi162Scf00912g00146 Petunia axillaris HOM05D001874 ORTHO05D002166 1.6e-16 89.7 89 55.1
Hma1.2p1_0415F.1_g148210 Hydrangea macrophylla HOM05D001874 ORTHO05D002166 5.9e-16 87.8 82 57.3
MD01G1228700 Malus domestica HOM05D001874 ORTHO05D002166 1.3e-15 86.7 86 53.5
vmacro10162 Vaccinium macrocarpon HOM05D001874 ORTHO05D002166 1.3e-15 86.7 69 66.7
Dinv29208 Davidia involucrata HOM05D001874 ORTHO05D002166 2.2e-15 85.9 84 54.8
MD07G1299800 Malus domestica HOM05D001874 ORTHO05D002166 2.9e-15 85.5 86 53.5
Actinidia08700 Actinidia chinensis HOM05D001874 ORTHO05D002166 5.0e-15 84.7 70 62.9
CSS0004406 Camellia sinensis var. sinensis HOM05D001874 ORTHO05D002166 8.5e-15 84.0 71 60.6
Dinv17297 Davidia involucrata HOM05D001874 ORTHO05D002166 1.1e-14 83.6 85 54.1
RcHm_v2.0_Chr1g0382931 Rosa chinensis HOM05D001874 ORTHO05D002166 1.5e-14 83.2 76 59.2
Rhsim09G0209900 Rhododendron simsii HOM05D001874 ORTHO05D002166 1.9e-14 82.8 87 54.0
Prupe.2G319500 Prunus persica HOM05D001874 ORTHO05D002166 2.5e-14 82.4 86 52.3
Actinidia34272 Actinidia chinensis HOM05D001874 ORTHO05D002166 3.2e-14 82.0 86 53.5
FvH4_7g32970 Fragaria vesca HOM05D001874 ORTHO05D002166 3.2e-14 82.0 85 51.8
FAN01G0715 Fragaria x ananassa HOM05D001874 ORTHO05D002166 3.2e-14 82.0 85 51.8
FAN03G2906 Fragaria x ananassa HOM05D001874 ORTHO05D002166 5.5e-14 81.3 85 50.6
FAN10G2792 Fragaria x ananassa HOM05D001874 ORTHO05D002166 9.4e-14 80.5 66 60.6
FAN10G3764 Fragaria x ananassa HOM05D001874 ORTHO05D002166 9.4e-14 80.5 66 60.6
SalBow6G2567 Salvia bowleyana HOM05D001874 ORTHO05D002166 2.7e-13 79.0 78 56.4
CANSAT21G1359 Cannabis sativa HOM05D001874 ORTHO05D002166 3.6e-13 78.6 84 52.4
Oeu062807.1 Olea europaea HOM05D001874 ORTHO05D002166 3.6e-13 78.6 80 55.0
DCAR_020377 Daucus carota HOM05D001874 ORTHO05D002166 4.7e-13 78.2 82 54.9
Lj7P285T36 Lonicera japonica HOM05D001874 ORTHO05D002166 1.4e-12 76.6 82 50.0
Psat5g071720 Pisum sativum HOM05D001874 ORTHO05D002166 1.8e-12 76.3 75 50.7
Lsat_1_v5_gn_1_129320 Lactuca sativa HOM05D001874 ORTHO05D002166 2.3e-12 75.9 64 57.8
TAR374G1109 Trochodendron aralioides HOM05D001874 ORTHO05D002166 1.2e-11 73.6 101 47.5
Ca_16797_v3 Cicer arietinum L. HOM05D001874 ORTHO05D002166 1.5e-11 73.2 86 47.7
TWI39G0792 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 1.5e-11 73.2 83 55.4
MSTRG.26973 Avicennia marina HOM05D001874 ORTHO05D002166 2.0e-11 72.8 78 52.6
AT5G24520 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 2.6e-11 72.4 63 55.6
Thhalv10004515m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 2.6e-11 72.4 63 55.6
PGR042G0141 Punica granatum HOM05D001874 ORTHO05D002166 2.6e-11 72.4 82 50.0
BcaNung07024 Brassica carinata HOM05D001874 ORTHO05D002166 3.4e-11 72.0 63 55.6
CARHR188910 Cardamine hirsuta HOM05D001874 ORTHO05D002166 3.4e-11 72.0 63 54.0
Glyma.06G136900 Glycine max HOM05D001874 ORTHO05D002166 3.4e-11 72.0 81 46.9
TAR629G2325 Trochodendron aralioides HOM05D001874 ORTHO05D002166 4.4e-11 71.6 85 48.2
Medtr3g092840 Medicago truncatula HOM05D001874 ORTHO05D002166 5.7e-11 71.2 70 50.0
Migut.F00147 Erythranthe guttata HOM05D001874 ORTHO05D002166 7.5e-11 70.9 69 52.2
Sabra12G0003600 Salix brachista HOM05D001874 ORTHO05D002166 7.5e-11 70.9 85 47.1
Sabra12G0008100 Salix brachista HOM05D001874 ORTHO05D002166 7.5e-11 70.9 85 47.1
Atru.chr12.2442 Acer truncatum HOM05D001874 ORTHO05D002166 9.8e-11 70.5 69 52.2
AL6G36110 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 9.8e-11 70.5 63 55.6
MSTRG.8607 Avicennia marina HOM05D001874 ORTHO05D002166 9.8e-11 70.5 78 51.3
BcaNung02018 Brassica carinata HOM05D001874 ORTHO05D002166 9.8e-11 70.5 78 47.4
BolC7t44845H Brassica oleracea HOM05D001874 ORTHO05D002166 9.8e-11 70.5 78 47.4
QL09p007015 Quercus lobata HOM05D001874 ORTHO05D002166 9.8e-11 70.5 66 57.6
Cc02_g00780 Coffea canephora HOM05D001874 ORTHO05D002166 1.3e-10 70.1 86 46.5
Potri.012G006100 Populus trichocarpa HOM05D001874 ORTHO05D002166 1.3e-10 70.1 85 47.1
BcaNung01239 Brassica carinata HOM05D001874 ORTHO05D002166 1.7e-10 69.7 78 47.4
A06p35320 Brassica napus HOM05D001874 ORTHO05D002166 1.7e-10 69.7 78 47.4
C07p43200 Brassica napus HOM05D001874 ORTHO05D002166 1.7e-10 69.7 78 47.4
BraA06t26458Z Brassica rapa HOM05D001874 ORTHO05D002166 1.7e-10 69.7 78 47.4
Carub.0006s2233 Capsella rubella HOM05D001874 ORTHO05D002166 1.7e-10 69.7 63 54.0
Sp2g22830 Schrenkiella parvula HOM05D001874 ORTHO05D002166 2.2e-10 69.3 89 44.9
GSVIVG01038651001 Vitis vinifera HOM05D001874 ORTHO05D002166 2.8e-10 68.9 83 47.0
Aqoxy4G02477 Aquilegia oxysepala HOM05D001874 ORTHO05D002166 3.7e-10 68.6 80 48.8
Manes.08G081811 Manihot esculenta HOM05D001874 ORTHO05D002166 3.7e-10 68.6 83 47.0
Manes.10G055500 Manihot esculenta HOM05D001874 ORTHO05D002166 3.7e-10 68.6 83 47.0
Sc19g0000550 Simmondsia chinensis HOM05D001874 ORTHO05D002166 3.7e-10 68.6 87 51.7
unitig_0.g2442 Utricularia gibba HOM05D001874 ORTHO05D002166 3.7e-10 68.6 77 49.4
Glyma.04G228000 Glycine max HOM05D001874 ORTHO05D002166 4.8e-10 68.2 81 48.1
Phvul.009G044700 Phaseolus vulgaris HOM05D001874 ORTHO05D002166 4.8e-10 68.2 81 44.4
Sabra15G0001700 Salix brachista HOM05D001874 ORTHO05D002166 4.8e-10 68.2 85 45.9
THA.LOC104798988 Tarenaya hassleriana HOM05D001874 ORTHO05D002166 4.8e-10 68.2 63 55.6
Eucgr.A01400 Eucalyptus grandis HOM05D001874 ORTHO05D002166 8.3e-10 67.4 85 44.7
Lj9P607T48 Lonicera japonica HOM05D001874 ORTHO05D025166 8.3e-10 67.4 60 56.7
Potri.015G002600 Populus trichocarpa HOM05D001874 ORTHO05D002166 8.3e-10 67.4 85 45.9
Aa31LG4G17990 Aethionema arabicum HOM05D001874 ORTHO05D002166 1.1e-09 67.0 72 50.0
Haze_00312 Corylus avellana HOM05D001874 ORTHO05D002166 1.1e-09 67.0 80 52.5
Lalb_Chr23g0271951 Lupinus albus HOM05D001874 ORTHO05D002166 1.1e-09 67.0 105 42.9
TWI23G0637 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 1.1e-09 67.0 84 52.4
VMungo1309G0260 Vigna mungo HOM05D001874 ORTHO05D002166 1.1e-09 67.0 81 43.2
CiPaw.06G040900 Carya illinoinensis HOM05D001874 ORTHO05D002166 1.4e-09 66.6 78 50.0
PSO782G1536 Papaver somniferum HOM05D001874 ORTHO05D002166 1.4e-09 66.6 69 52.2
TPR.G33378 Trifolium pratense HOM05D001874 ORTHO05D002166 1.4e-09 66.6 86 40.7
SHI41362 Sapria himalayana HOM05D001874 ORTHO05D002166 2.4e-09 65.9 82 43.9
Cpa.g.sc3.159 Carica papaya HOM05D001874 ORTHO05D002166 4.1e-09 65.1 66 53.0
COL.COLO4_14375 Corchorus olitorius HOM05D001874 ORTHO05D002166 4.1e-09 65.1 77 45.5
MELO3C018988.2 Cucumis melo HOM05D001874 ORTHO05D002166 4.1e-09 65.1 73 46.6
Lj1g0024135 Lotus japonicus HOM05D001874 ORTHO05D002166 4.1e-09 65.1 70 51.4
ClCG10G008610 Citrullus lanatus HOM05D001874 ORTHO05D002166 5.4e-09 64.7 101 43.6
Hund09718 Selenicereus undatus HOM05D001874 ORTHO05D002166 5.4e-09 64.7 93 45.2
CsaV3_4G008980 Cucumis sativus L. HOM05D001874 ORTHO05D002166 1.2e-08 63.5 101 43.6
Duzib084G0332 Durio zibethinus HOM05D001874 ORTHO05D002166 1.6e-08 63.2 80 43.8
AUR62028082 Chenopodium quinoa HOM05D001874 ORTHO05D002166 2.0e-08 62.8 94 46.8
Duzib068G0377 Durio zibethinus HOM05D001874 ORTHO05D002166 2.0e-08 62.8 103 40.8
Duzib205G0313 Durio zibethinus HOM05D001874 ORTHO05D002166 2.0e-08 62.8 103 41.7
Thecc.03G209300 Theobroma cacao HOM05D001874 ORTHO05D002166 2.0e-08 62.8 96 41.7
CDE04G3673 Ceratophyllum demersum HOM05D001874 ORTHO05D002166 1.3e-07 60.1 57 50.9
Gohir.1Z049560 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.7e-07 59.7 75 42.7
Gohir.D04G000300 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.7e-07 59.7 75 42.7
Gorai.012G001200 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.7e-07 59.7 75 42.7
Gohir.A08G104600 Gossypium hirsutum HOM05D001874 ORTHO05D002166 3.8e-07 58.5 87 42.5
Gohir.D08G116300 Gossypium hirsutum HOM05D001874 ORTHO05D002166 3.8e-07 58.5 87 42.5
Gorai.004G125200 Gossypium raimondii HOM05D001874 ORTHO05D002166 3.8e-07 58.5 87 42.5
CDE12G0578 Ceratophyllum demersum HOM05D001874 ORTHO05D002166 6.6e-07 57.8 50 52.0
EL10Ac3g05168 Beta vulgaris HOM05D001874 ORTHO05D002166 1.5e-06 56.6 66 48.5
Ciclev10005375m.g Citrus clementina HOM05D001874 ORTHO05D002166 1.5e-06 56.6 66 45.5
Sed0024748 Sechium edule HOM05D001874 ORTHO05D002166 1.5e-06 56.6 71 49.3
PSO063G2595 Papaver somniferum HOM05D001874 ORTHO05D002166 1.9e-06 56.2 88 43.2
TWI32G0051 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 2.5e-06 55.8 67 44.8
Ah.07g204410 Amaranthus hybridus HOM05D001874 ORTHO05D002166 5.5e-06 54.7 94 42.6
Manes.04G096000 Manihot esculenta HOM05D001874 ORTHO05D002166 5.5e-06 54.7 67 41.8
TWI34G1897 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 7.2e-06 54.3 67 43.3
AagrBONN_evm.TU.Sc2ySwM_228.5657 Anthoceros agrestis HOM05D001874 ORTHO05D002166 9.5e-06 53.9 69 39.1
AUR62005988 Chenopodium quinoa HOM05D001874 ORTHO05D002166 9.5e-06 53.9 94 44.7
SEGI_09231 Sequoiadendron giganteum HOM05D001874 ORTHO05D002166 9.5e-06 53.9 69 40.6


User provided reference genes

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