Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 4.5e-118 427.9 217 100.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.0e-94 349.4 291 68.7
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 6.6e-93 344.4 291 68.0
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 6.1e-91 337.8 291 67.7
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 2.9e-72 275.8 251 65.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.5e-52 209.5 168 70.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 3.3e-44 182.6 164 65.9
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 3.6e-43 179.1 216 52.3
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 3.6e-43 179.1 216 52.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.6e-43 179.1 216 52.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.6e-43 179.1 216 52.3
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 8.1e-43 177.9 216 51.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 8.1e-43 177.9 216 51.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.5e-41 173.7 215 50.2
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 9.9e-41 171.0 215 48.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.9e-40 169.5 212 49.5
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.9e-40 169.5 182 55.5
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.9e-40 169.5 215 49.3
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 4.9e-40 168.7 215 49.3
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 6.4e-40 168.3 214 49.1
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.9e-39 166.8 211 50.2
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 7.1e-39 164.9 217 49.3
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 7.1e-39 164.9 216 50.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 7.1e-39 164.9 216 49.1
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.2e-38 164.1 217 49.8
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.6e-38 163.7 214 48.6
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.1e-38 163.3 217 48.8
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 2.7e-38 162.9 215 47.0
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.7e-38 162.9 213 49.8
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 3.5e-38 162.5 213 49.3
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 4.6e-38 162.2 214 47.7
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 4.6e-38 162.2 215 47.4
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 6.0e-38 161.8 217 46.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 6.0e-38 161.8 217 46.5
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.0e-38 161.8 215 47.9
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 6.0e-38 161.8 215 47.9
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 7.9e-38 161.4 215 47.4
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.0e-37 161.0 215 47.4
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.0e-37 161.0 215 47.4
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.3e-37 160.6 215 46.5
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 2.3e-37 159.8 217 46.5
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.3e-37 159.8 215 47.4
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.3e-37 159.8 215 47.4
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.0e-37 159.5 215 48.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.9e-37 159.1 216 48.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 5.1e-37 158.7 214 47.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 5.1e-37 158.7 217 47.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 6.7e-37 158.3 215 47.4
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 6.7e-37 158.3 217 45.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 8.7e-37 157.9 214 47.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 8.7e-37 157.9 189 53.4
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.1e-36 157.5 217 46.1
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.1e-36 157.5 217 47.0
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.1e-36 157.5 217 45.6
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.5e-36 157.1 217 46.1
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 4.3e-36 155.6 221 43.9
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 5.6e-36 155.2 215 45.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 5.6e-36 155.2 215 46.0
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 7.4e-36 154.8 199 47.7
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 9.6e-36 154.5 199 48.7
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 9.6e-36 154.5 215 45.1
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.3e-35 154.1 215 45.6
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.3e-35 154.1 215 45.6
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.3e-35 154.1 215 46.0
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.1e-35 153.3 214 47.2
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 2.1e-35 153.3 217 45.6
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.1e-35 153.3 199 47.2
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 3.7e-35 152.5 173 50.9
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.2e-35 151.8 199 47.7
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 8.1e-35 151.4 216 44.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.8e-34 150.2 170 48.8
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.8e-34 150.2 217 45.2
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.4e-34 149.8 216 46.8
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.4e-34 149.8 215 47.4
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 2.4e-34 149.8 217 46.1
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-34 149.4 215 44.2
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-34 149.4 215 44.2
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-34 149.4 215 44.2
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-34 149.4 215 44.2
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-34 149.4 218 44.0
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 4.0e-34 149.1 218 43.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 5.3e-34 148.7 211 44.1
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 6.9e-34 148.3 217 43.8
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 6.9e-34 148.3 217 46.1
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.9e-34 148.3 217 46.1
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.2e-33 147.5 215 44.7
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.5e-33 147.1 197 48.7
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.5e-33 147.1 215 42.8
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.0e-33 146.7 217 44.7
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 3.4e-33 146.0 219 46.6
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 4.5e-33 145.6 217 42.9
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 4.5e-33 145.6 215 44.2
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.0e-32 144.4 199 45.7
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 2.9e-32 142.9 213 44.1
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 3.8e-32 142.5 210 43.8
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.8e-32 142.5 217 42.4
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.2e-31 139.4 217 41.5
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.5e-31 138.7 197 45.7
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.5e-30 136.0 218 41.3
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 3.5e-30 136.0 218 41.3
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 3.5e-30 136.0 218 41.3
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 4.6e-30 135.6 218 41.3
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 4.6e-30 135.6 218 41.3
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.6e-30 135.6 203 43.3
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.0e-30 135.2 218 41.3
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 6.0e-30 135.2 215 40.0
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.9e-30 134.8 204 44.6
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 7.9e-30 134.8 205 43.9
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 2.3e-29 133.3 193 45.1
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.9e-28 130.2 203 40.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.5e-28 129.8 202 40.1
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.3e-28 129.4 210 40.5
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.3e-27 127.5 142 54.9
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.1e-26 124.4 168 39.9
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 2.4e-26 123.2 220 37.3
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 2.0e-25 120.2 181 44.2
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.0e-24 117.9 77 79.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 7.2e-23 111.7 78 74.4
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.2e-22 110.9 78 74.4
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.1e-22 110.2 217 34.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 2.7e-22 109.8 200 39.5
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 4.6e-22 109.0 145 43.4
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 5.1e-21 105.5 92 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.1e-21 105.5 212 34.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 5.1e-21 105.5 150 42.7
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.2e-19 100.1 181 40.3
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.5e-17 94.0 174 37.9
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.6e-17 93.2 169 36.7
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.4e-15 87.4 82 67.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 9.1e-10 68.2 63 58.7
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.5e-09 67.4 138 30.4
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 1.7e-08 63.9 119 38.7
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 5.5e-07 58.9 70 44.3


User provided reference genes

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