Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 3.9e-235 817.8 415 100.0
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 4.0e-232 807.7 415 98.6
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 8.1e-201 703.7 382 92.1
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.3e-195 686.4 422 82.0
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.8e-193 678.7 420 81.2
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 3.4e-175 618.6 383 79.9
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.0e-171 607.1 414 72.5
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 9.1e-168 594.0 388 74.7
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 1.6e-167 593.2 373 75.9
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.5e-165 586.6 401 72.3
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 4.2e-165 585.1 383 73.4
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.2e-161 572.8 411 70.3
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 4.8e-161 571.6 386 73.1
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.4e-160 570.1 417 68.6
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.6e-159 566.6 413 69.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 2.7e-159 565.8 412 68.7
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.0e-158 563.9 380 73.7
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 6.5e-158 561.2 376 71.8
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 6.5e-158 561.2 381 71.7
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.1e-157 560.5 410 67.6
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.1e-157 560.5 411 69.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.5e-157 560.1 411 69.3
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.2e-156 557.0 410 67.1
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 8.0e-156 554.3 386 71.0
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.0e-155 553.9 415 68.2
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.0e-155 553.9 386 71.2
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.4e-155 553.5 420 67.1
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.8e-155 553.1 385 70.6
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 6.8e-155 551.2 381 70.6
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 6.8e-155 551.2 394 69.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.5e-154 550.1 416 67.3
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 2.6e-154 549.3 381 69.0
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.6e-154 549.3 388 69.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 4.4e-154 548.5 403 67.7
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 5.7e-154 548.1 390 69.5
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 7.5e-154 547.7 383 69.7
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 7.5e-154 547.7 388 68.0
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 9.8e-154 547.4 399 67.2
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.3e-153 547.0 380 71.1
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.7e-153 546.6 394 68.5
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.2e-153 546.2 377 69.8
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 2.8e-153 545.8 387 68.7
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.8e-153 545.8 386 69.4
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.8e-153 545.8 386 69.4
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.1e-152 543.9 393 68.2
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.4e-152 543.5 356 73.3
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 3.1e-152 542.3 380 69.2
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 5.4e-152 541.6 365 71.8
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 9.1e-152 540.8 405 64.9
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 9.1e-152 540.8 392 67.1
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.2e-151 540.4 391 67.5
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 4.5e-151 538.5 376 68.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 5.9e-151 538.1 385 67.3
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.0e-150 537.3 415 65.5
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.3e-150 537.0 375 68.5
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 3.8e-150 535.4 415 64.8
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.0e-150 535.0 396 66.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.5e-149 533.5 362 72.1
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.5e-149 533.5 366 71.0
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 7.2e-149 531.2 395 66.1
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 9.4e-149 530.8 411 65.0
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 2.1e-148 529.6 397 67.3
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 2.7e-148 529.3 397 67.0
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.7e-148 529.3 404 64.4
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 4.7e-148 528.5 410 64.9
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 6.1e-148 528.1 376 66.8
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.4e-147 526.9 366 71.0
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.4e-147 526.9 366 69.4
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.4e-147 526.9 374 68.2
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.3e-147 526.2 377 67.1
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 6.8e-147 524.6 412 64.3
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 2.0e-146 523.1 388 65.7
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.6e-146 522.7 386 66.8
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 9.8e-146 520.8 448 58.7
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.3e-145 520.4 379 65.7
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.2e-145 519.6 385 68.6
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.8e-145 519.2 374 67.9
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.8e-145 519.2 378 65.6
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 8.3e-145 517.7 379 66.2
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 4.1e-144 515.4 383 67.6
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.0e-142 510.8 401 64.6
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.9e-142 509.2 417 62.8
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 6.6e-142 508.1 409 62.8
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 6.6e-142 508.1 379 67.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 8.6e-142 507.7 379 67.3
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.5e-141 506.9 370 67.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.5e-141 506.9 370 67.8
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.3e-141 505.4 409 62.1
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.0e-139 500.7 404 62.4
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.8e-139 500.0 379 63.9
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 7.5e-138 494.6 387 63.6
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.7e-137 493.4 366 67.5
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 6.4e-137 491.5 412 60.4
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.6e-127 460.3 365 62.7
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 4.6e-127 458.8 379 60.2
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 3.0e-126 456.1 417 58.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 6.6e-126 454.9 363 62.3
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 3.4e-122 442.6 362 61.9
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.0e-118 431.0 364 60.2
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 5.1e-118 428.7 278 78.8
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 8.6e-118 427.9 392 57.7
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 5.6e-117 425.2 377 59.2
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.6e-116 423.7 388 56.2
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 3.4e-114 416.0 368 57.1
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 7.6e-114 414.8 388 54.6
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 2.3e-110 403.3 387 52.5
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 3.9e-110 402.5 373 56.8
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 8.9e-107 391.3 368 55.4
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 8.9e-107 391.3 384 51.3
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.5e-101 374.0 380 52.4
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 7.9e-95 351.7 315 57.8
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 5.1e-94 349.0 279 62.0
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.1e-92 343.6 385 48.8
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.1e-86 322.4 224 67.9
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.6e-84 317.4 316 53.2
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.9e-77 293.9 178 78.7
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.9e-77 293.9 178 78.7
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.1e-76 290.4 389 43.4
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.1e-64 251.5 391 40.9
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 6.9e-59 232.3 170 67.1
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.6e-58 230.3 410 39.0
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 8.0e-47 192.2 117 76.1
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.4e-40 168.7 135 67.4
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-38 165.2 130 62.3
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.3e-38 164.1 398 33.2
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.3e-36 156.0 142 59.9
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.2e-26 125.2 83 72.3
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.2e-26 125.2 385 30.6
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 2.0e-13 81.3 80 56.2
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.0e-09 66.6 73 47.9
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.0e-09 66.6 73 47.9
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 8.6e-09 65.9 107 37.4
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 1.6e-07 61.6 297 23.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.1e-07 59.3 401 22.9


User provided reference genes

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