Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 3.5e-174 614.8 292 100.0
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 6.4e-168 594.0 286 98.6
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 2.7e-134 482.3 275 82.2
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.1e-124 450.3 277 78.3
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 1.7e-120 436.4 292 68.5
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 1.6e-118 429.9 295 66.4
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 3.7e-115 418.7 291 64.9
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 2.0e-113 412.9 291 64.6
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 4.5e-113 411.8 293 63.8
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 1.3e-112 410.2 288 65.6
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 1.3e-112 410.2 293 64.2
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 6.5e-112 407.9 288 64.9
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 1.9e-111 406.4 300 61.7
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 5.5e-111 404.8 292 64.4
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 9.4e-111 404.1 291 63.6
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.1e-110 402.9 292 64.4
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 7.9e-110 401.0 293 63.5
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.0e-109 400.6 265 71.7
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 8.8e-109 397.5 299 61.2
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 3.3e-108 395.6 293 62.1
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 4.4e-108 395.2 291 62.2
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 1.7e-107 393.3 284 63.4
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 2.2e-107 392.9 290 61.0
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 4.8e-107 391.7 290 63.4
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 1.1e-106 390.6 287 62.4
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 1.4e-106 390.2 281 64.4
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 4.1e-106 388.7 287 62.4
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 5.3e-106 388.3 301 59.8
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 1.6e-105 386.7 267 63.7
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 4.5e-105 385.2 291 62.2
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 2.9e-104 382.5 291 61.2
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 5.5e-103 378.3 291 59.8
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 8.8e-101 370.9 289 59.9
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 2.0e-100 369.8 271 60.1
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 1.7e-99 366.7 290 59.0
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 1.7e-99 366.7 290 59.0
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 2.8e-99 365.9 286 58.0
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 3.7e-99 365.5 288 59.0
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 6.3e-99 364.8 292 57.2
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 8.2e-99 364.4 288 59.4
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 5.3e-98 361.7 298 57.0
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 1.6e-97 360.1 287 57.5
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 2.0e-97 359.8 292 56.5
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 1.0e-96 357.5 285 57.2
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 1.0e-96 357.5 293 59.7
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 1.9e-95 353.2 290 57.2
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 3.2e-95 352.4 291 58.8
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 2.7e-94 349.4 292 54.5
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 1.8e-93 346.7 266 62.4
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 1.2e-92 344.0 280 58.2
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 9.8e-92 340.9 234 64.1
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 1.7e-91 340.1 278 57.9
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 4.8e-91 338.6 244 63.1
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 2.4e-90 336.3 275 56.0
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 9.1e-90 334.3 280 56.1
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 2.7e-89 332.8 288 55.6
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 5.9e-89 331.6 234 62.0
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 5.5e-87 325.1 228 73.2
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 1.2e-86 323.9 270 58.5
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 5.2e-85 318.5 321 50.5
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 8.3e-83 311.2 286 50.7
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 1.1e-74 284.3 221 60.2
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 7.8e-73 278.1 283 46.3
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 7.3e-71 271.6 288 51.4
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 2.3e-69 266.5 216 56.5
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 2.3e-69 266.5 290 45.9
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 1.5e-68 263.8 230 53.9
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 6.8e-61 238.4 233 50.6
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 2.0e-60 236.9 289 40.5
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 9.8e-60 234.6 271 40.6
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 8.3e-59 231.5 182 58.8
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 9.2e-58 228.0 369 37.9
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 3.0e-56 223.0 274 39.1
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 4.7e-54 215.7 211 47.9
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 3.9e-48 196.1 109 79.8
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 2.8e-38 163.3 137 56.9
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 3.9e-32 142.9 104 62.5
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 2.1e-22 110.5 368 26.1
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 3.7e-22 109.8 63 74.6
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 1.0e-19 101.7 176 36.4
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 1.1e-15 88.2 66 62.1
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 1.4e-13 81.3 93 47.3
MBI01_g18879_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 4.3e-07 59.7 43 55.8


User provided reference genes

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