Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.0e-180 636.7 345 100.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.6e-178 628.2 345 98.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-162 576.6 345 90.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.1e-148 528.1 345 83.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.9e-145 517.7 345 82.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.0e-144 516.2 345 81.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 2.1e-141 506.1 345 81.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.1e-140 501.5 345 79.4
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-138 496.5 315 86.3
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.1e-138 496.1 345 78.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 8.1e-138 494.2 345 76.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 5.8e-136 488.0 345 76.8
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.5e-135 484.6 345 75.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 8.4e-135 484.2 345 74.8
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-134 483.8 345 75.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 75.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.2e-134 482.3 345 75.4
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.2e-134 481.9 344 76.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 9.3e-134 480.7 345 75.9
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.5e-133 478.8 346 76.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.3e-132 476.9 345 73.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.8e-132 476.5 345 75.1
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.1e-132 474.9 345 73.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.1e-131 473.8 335 75.2
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.3e-130 470.3 341 77.4
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.7e-130 468.8 345 73.3
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 6.3e-130 468.0 335 74.9
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.1e-129 465.7 341 74.5
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 4.1e-129 465.3 345 73.3
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.4e-128 462.2 345 72.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.4e-128 462.2 341 73.9
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.5e-128 461.8 347 73.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.9e-128 461.5 337 72.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 71.6
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.9e-127 459.1 342 72.5
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.1e-126 457.2 345 71.9
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.9e-126 456.4 345 72.2
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.9e-126 456.4 345 69.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-126 456.1 345 71.6
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.2e-126 455.7 370 68.9
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.5e-126 454.9 345 71.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-125 453.8 345 71.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 71.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 71.0
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 6.1e-125 451.4 335 72.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.0e-124 449.1 345 70.1
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.7e-123 444.9 345 71.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.8e-122 441.8 319 76.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.3e-122 441.4 345 67.8
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.8e-121 439.9 345 68.1
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.6e-120 436.0 345 66.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.4e-120 435.6 345 68.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 7.7e-120 434.5 345 68.4
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.9e-119 432.6 342 68.1
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.8e-119 432.2 344 67.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.9e-118 429.9 345 66.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 344 67.2
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.1e-117 424.9 340 65.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 7.9e-117 424.5 345 66.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 68.7
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 68.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 4.4e-115 418.7 345 67.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.4e-113 413.7 345 65.5
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 66.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 65.8
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-111 407.5 287 77.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.3e-111 407.1 287 75.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 3.8e-111 405.6 340 65.0
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.5e-111 404.8 394 60.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.4e-110 403.7 319 69.9
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.4e-110 401.0 345 65.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 7.9e-109 397.9 345 64.3
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 7.9e-109 397.9 345 64.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-109 397.9 345 65.5
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-108 397.1 346 64.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 8.8e-108 394.4 331 65.0
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 4.4e-107 392.1 346 65.9
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-105 387.5 328 65.2
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 3.1e-105 386.0 345 64.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 3.1e-105 386.0 261 79.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.1e-105 385.6 341 61.9
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.9e-104 381.7 345 61.7
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 62.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 63.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-103 380.6 345 62.3
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.5e-103 377.9 345 63.5
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-102 376.3 345 60.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.1e-101 373.2 337 61.7
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.0e-101 371.3 345 61.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.0e-101 371.3 345 61.2
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.2e-99 367.5 347 58.8
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.7e-99 365.2 287 67.2
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 8.2e-98 361.3 373 58.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.1e-97 360.9 345 59.4
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.0e-97 358.2 338 59.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.2e-96 357.5 345 58.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 5.9e-96 355.1 366 57.1
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 7.7e-96 354.8 345 59.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.9e-95 352.8 345 60.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.1e-94 350.9 345 60.3
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.9e-94 350.1 348 58.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.2e-94 349.4 322 59.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 5.5e-94 348.6 294 66.7
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-92 344.0 345 56.5
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.8e-92 343.6 350 56.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.7e-91 338.6 343 57.1
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.7e-91 338.6 349 56.2
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.7e-90 337.0 345 55.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.2e-90 336.7 348 56.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.4e-89 334.0 323 58.5
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.1e-89 332.4 323 58.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.0e-88 330.1 345 54.5
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.8e-87 325.9 346 56.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.8e-87 325.9 346 56.1
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-86 324.3 346 55.5
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-86 323.9 347 57.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 9.5e-86 321.2 346 54.9
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 6.8e-84 315.1 344 53.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.0e-83 313.5 324 55.9
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.3e-82 310.8 346 55.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 4.5e-80 302.4 341 54.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.3e-79 300.8 349 52.7
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-78 297.7 340 49.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-78 297.4 346 53.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.3e-78 296.2 346 52.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.3e-78 296.2 288 58.7
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 7.3e-78 295.0 315 56.8
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.8e-77 293.1 346 50.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.8e-76 290.4 318 54.4
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.3e-76 290.0 345 48.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.0e-76 289.3 305 56.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 6.8e-76 288.5 341 52.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.5e-75 287.3 345 49.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.5e-75 285.0 344 51.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.8e-75 284.6 342 52.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.2e-73 278.1 345 48.4
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.5e-72 276.2 343 51.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 4.6e-72 275.8 341 51.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.3e-70 268.5 265 58.9
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 5.2e-68 262.3 282 57.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.0e-67 260.4 324 49.1
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-66 257.7 281 55.9
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.7e-66 257.3 293 55.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 8.3e-66 255.0 300 54.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.9e-65 253.8 224 65.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.1e-62 244.6 345 46.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-62 244.6 289 50.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 6.2e-61 238.8 288 49.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 5.4e-57 225.7 356 44.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 6.0e-56 222.2 340 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 6.0e-56 222.2 350 38.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-55 221.5 321 44.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.7e-55 220.7 354 43.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.5e-54 216.9 138 87.7
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 3.8e-50 203.0 345 37.7
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.1e-49 199.5 296 44.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-47 193.7 239 51.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.6e-46 188.3 254 48.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.8e-42 176.4 158 65.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.8e-42 176.4 152 66.4
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.3e-41 171.8 304 43.4
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 6.0e-40 169.1 185 49.2
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.1e-37 160.6 173 55.5
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.6e-32 144.4 321 36.8
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.5e-30 137.9 321 35.5
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 5.5e-25 119.4 289 36.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.1e-25 119.0 172 48.8
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.7e-21 106.7 284 33.8
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.7e-21 106.7 284 33.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 9.3e-17 92.0 91 61.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 3.3e-14 83.6 55 80.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.8e-13 80.5 111 50.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.3e-13 79.3 54 75.9
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 6.3e-13 79.3 289 30.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 3.0e-07 60.5 95 46.3
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 7.4e-06 55.8 89 42.7


User provided reference genes

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