Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.3e-168 595.5 301 100.0
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 3.1e-165 585.1 301 98.3
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 5.1e-160 567.8 299 96.7
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 3.2e-146 521.9 298 87.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 4.8e-118 428.3 296 76.7
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.7e-113 412.5 319 69.9
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 6.5e-99 364.8 315 64.1
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 4.2e-98 362.1 296 62.5
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 2.4e-93 346.3 267 65.2
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.7e-91 340.1 297 59.9
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 6.5e-91 338.2 252 63.5
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.1e-90 337.4 296 60.1
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.5e-90 336.3 266 62.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 9.4e-90 334.3 293 59.4
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.2e-89 334.0 266 62.8
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.6e-89 333.6 286 59.4
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 3.6e-89 332.4 271 59.8
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 1.2e-87 327.4 284 58.1
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 2.2e-86 323.2 271 57.6
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.8e-86 322.8 294 56.5
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 6.3e-86 321.6 271 57.6
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 8.2e-86 321.2 260 61.5
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.1e-85 320.9 272 62.9
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.1e-85 320.9 244 63.9
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.8e-85 320.1 264 60.2
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 4.1e-85 318.9 275 58.2
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 2.7e-84 316.2 270 59.6
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 3.5e-84 315.8 275 57.5
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.3e-83 313.9 283 57.2
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.3e-83 313.9 296 56.4
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.2e-83 313.2 258 58.9
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 2.9e-83 312.8 284 57.7
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.8e-83 312.4 281 58.4
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.1e-82 310.8 291 55.0
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.5e-82 310.5 325 51.7
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.9e-82 310.1 227 64.8
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.9e-82 310.1 263 59.7
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-82 310.1 263 59.7
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-82 310.1 263 59.7
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.5e-82 309.7 263 59.7
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.5e-82 309.7 243 62.6
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 3.2e-82 309.3 273 57.9
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.2e-82 308.9 271 59.4
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 5.5e-82 308.5 275 56.7
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 9.4e-82 307.8 288 54.5
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 1.2e-81 307.4 271 58.3
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.2e-81 307.4 298 55.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.2e-81 307.4 266 56.4
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.6e-81 305.8 278 57.6
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 4.7e-81 305.4 264 57.6
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.0e-80 304.3 264 58.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.0e-80 304.3 261 59.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.0e-80 304.3 261 59.0
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-80 303.9 263 58.6
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.8e-80 303.5 269 58.0
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.8e-80 303.5 263 60.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.8e-80 303.5 258 60.5
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.3e-80 303.1 273 57.9
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 2.3e-80 303.1 264 59.5
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.3e-80 303.1 269 58.0
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 4.0e-80 302.4 267 56.9
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 6.8e-80 301.6 266 58.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 6.8e-80 301.6 297 55.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 8.8e-80 301.2 255 58.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 2.6e-79 299.7 316 52.2
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 4.4e-79 298.9 282 54.6
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 7.5e-79 298.1 274 56.6
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.3e-78 297.4 282 54.3
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.3e-78 297.4 260 55.8
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 2.8e-78 296.2 268 57.5
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 2.8e-78 296.2 268 57.5
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 2.8e-78 296.2 268 57.5
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.8e-78 296.2 295 53.2
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 6.3e-78 295.0 270 56.3
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.4e-77 293.9 253 58.1
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 2.4e-77 293.1 257 57.2
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 5.4e-77 292.0 267 56.2
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.6e-76 290.4 238 59.2
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 2.0e-76 290.0 242 59.1
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.0e-76 290.0 297 52.2
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 4.5e-76 288.9 238 61.3
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.9e-75 286.2 279 54.1
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 8.6e-75 284.6 303 51.8
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 5.5e-74 282.0 268 55.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 9.5e-74 281.2 279 53.8
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 1.6e-73 280.4 274 51.5
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 6.1e-73 278.5 274 51.1
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 1.8e-72 276.9 274 51.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 4.0e-72 275.8 274 51.5
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 4.0e-72 275.8 270 54.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.4e-71 272.7 264 54.9
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.4e-69 267.3 268 52.6
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 7.3e-66 255.0 205 62.0
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 4.7e-65 252.3 263 49.0
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.2e-63 247.7 232 53.9
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 5.4e-61 238.8 234 48.7
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 7.0e-61 238.4 175 65.1
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.5e-60 236.1 232 53.9
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 7.8e-60 235.0 240 50.8
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.1e-58 231.1 205 58.5
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.1e-56 223.0 205 55.6
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.9e-53 213.8 244 48.4
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 6.6e-51 205.3 290 42.8
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.4e-47 192.6 243 44.4
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.2e-44 184.5 189 48.1
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 5.6e-42 175.6 242 43.4
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 3.8e-38 162.9 239 39.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 7.3e-34 148.7 154 53.9
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 2.4e-32 143.7 271 32.5
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 237 35.4
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 99 62.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 99 62.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.4e-29 134.4 137 56.2
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 9.3e-29 131.7 146 48.6
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.3e-29 131.7 153 51.0
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-27 127.5 149 49.7
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.3e-26 123.2 237 34.6
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.8e-25 120.2 130 50.8
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 3.6e-25 119.8 100 66.0
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.7e-20 103.6 312 28.2
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 4.6e-20 102.8 262 29.0
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 7.9e-20 102.1 267 30.7
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 9.6e-18 95.1 146 37.7
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.9e-14 83.6 87 48.3
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 6.4e-14 82.4 66 62.1
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.2e-12 78.2 68 50.0
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 2.7e-12 77.0 76 50.0
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.9e-12 75.5 58 60.3
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.5e-10 71.2 51 70.6
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 3.8e-06 56.6 30 80.0


User provided reference genes

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