Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 1.3e-45 186.0 93 100.0
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 2.3e-39 165.2 93 87.1
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 4.4e-38 161.0 81 100.0
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.4e-37 157.1 93 82.8
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.6e-35 152.5 92 80.4
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.0e-34 149.8 93 80.6
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.9e-34 147.9 93 78.5
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.9e-34 147.9 93 78.5
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.6e-32 142.5 93 75.3
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 5.2e-31 137.5 93 69.9
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 6.8e-31 137.1 92 72.8
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 6.8e-31 137.1 94 71.3
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.2e-30 136.3 94 71.3
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.2e-30 136.3 94 71.3
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.2e-30 136.3 91 71.4
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 72.3
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.0e-30 135.6 94 72.3
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.0e-30 135.6 92 65.2
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.0e-30 135.6 94 71.3
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 2.6e-30 135.2 93 68.8
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 3.4e-30 134.8 94 69.1
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 5.8e-30 134.0 92 69.6
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 7.5e-30 133.7 94 69.1
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 69.9
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 69.9
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 9.8e-30 133.3 94 70.2
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.3e-29 132.9 91 68.1
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.3e-29 132.9 95 68.4
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 1.7e-29 132.5 95 69.5
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.2e-29 132.1 93 71.0
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 2.2e-29 132.1 92 67.4
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 2.2e-29 132.1 93 68.8
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 71.0
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 69.9
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 2.9e-29 131.7 93 67.7
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 3.7e-29 131.3 93 68.8
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 70.2
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 4.9e-29 131.0 93 67.7
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 6.4e-29 130.6 94 67.0
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 6.4e-29 130.6 94 68.1
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 6.4e-29 130.6 94 68.1
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 8.3e-29 130.2 92 64.1
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 64.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 68.5
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 1.4e-28 129.4 94 63.8
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.4e-28 129.4 94 67.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 65.6
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 66.7
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.9e-28 129.0 95 66.3
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 69.9
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 2.4e-28 128.6 94 66.0
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 94 66.0
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 66.7
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 67.7
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 67.7
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 67.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 3.2e-28 128.3 92 67.4
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.2e-28 128.3 92 67.4
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 3.2e-28 128.3 91 69.2
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 4.1e-28 127.9 93 67.7
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 5.4e-28 127.5 93 65.6
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.4e-28 127.5 92 66.3
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 5.4e-28 127.5 94 66.0
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 7.1e-28 127.1 91 64.8
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 7.1e-28 127.1 93 68.8
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.1e-28 127.1 93 66.7
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 9.2e-28 126.7 92 63.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 9.2e-28 126.7 93 63.4
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.2e-27 126.3 93 66.7
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.2e-27 126.3 95 65.3
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.2e-27 126.3 93 67.7
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.2e-27 126.3 93 64.5
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.2e-27 126.3 94 66.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.2e-27 126.3 91 67.0
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 1.6e-27 125.9 94 66.0
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 1.6e-27 125.9 94 64.9
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.6e-27 125.9 93 66.7
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.1e-27 125.6 93 67.7
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.1e-27 125.6 92 66.3
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.1e-27 125.6 95 65.3
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 2.7e-27 125.2 93 64.5
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.7e-27 125.2 87 67.8
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 3.5e-27 124.8 92 66.3
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.6e-27 124.4 93 66.7
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.6e-27 124.4 93 63.4
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 67.7
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 63.4
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 62.8
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 66.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 66.7
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 7.8e-27 123.6 92 64.1
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 7.8e-27 123.6 92 64.1
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.0e-26 123.2 93 62.4
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 1.0e-26 123.2 93 60.2
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-26 123.2 92 64.1
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-26 123.2 92 64.1
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-26 123.2 92 64.1
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.3e-26 122.9 91 61.5
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.7e-26 122.5 93 67.7
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.7e-26 122.5 93 66.7
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 67.7
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.3e-26 122.1 91 63.7
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.3e-26 122.1 94 64.9
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 61.3
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 64.5
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.0e-26 121.7 93 67.7
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 3.0e-26 121.7 92 64.1
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 3.0e-26 121.7 93 66.7
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 3.9e-26 121.3 93 63.4
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.9e-26 121.3 91 61.5
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 5.1e-26 120.9 93 64.5
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 6.6e-26 120.6 93 65.6
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.6e-26 120.6 92 65.2
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 6.6e-26 120.6 94 63.8
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.6e-26 120.6 93 63.4
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 8.6e-26 120.2 93 64.5
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 8.6e-26 120.2 93 63.4
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.6e-26 120.2 78 67.9
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 1.1e-25 119.8 93 64.5
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.1e-25 119.8 93 65.6
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 1.1e-25 119.8 93 64.5
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 1.1e-25 119.8 81 65.4
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 2.5e-25 118.6 93 62.4
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 2.5e-25 118.6 93 62.4
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 3.3e-25 118.2 91 60.4
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 4.3e-25 117.9 93 65.6
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 5.6e-25 117.5 93 64.5
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 7.3e-25 117.1 93 63.4
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 7.3e-25 117.1 91 61.5
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.2e-24 116.3 93 63.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.2e-24 116.3 78 65.4
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.6e-24 115.9 94 61.7
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 6.2e-24 114.0 97 56.7
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 8.1e-24 113.6 93 62.4
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 8.1e-24 113.6 97 58.8
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.4e-23 112.8 94 59.6
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.0e-23 111.3 78 66.7
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 6.8e-23 110.5 93 61.3
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 6.8e-23 110.5 93 61.3
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-22 109.8 91 59.3
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-22 109.8 91 58.2
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.4e-22 108.2 92 60.9
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.8e-22 107.5 78 60.3
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 7.6e-22 107.1 82 65.9
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 7.6e-22 107.1 91 58.2
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.2e-21 105.5 91 56.0
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.2e-21 105.5 92 59.8
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 4.9e-21 104.4 91 56.0
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 2.4e-20 102.1 82 63.4
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 4.1e-20 101.3 84 63.1
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 4.1e-20 101.3 81 61.7
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 9.2e-20 100.1 100 51.0
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 2.1e-19 99.0 101 52.5
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 2.7e-19 98.6 81 60.5
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.5e-19 98.2 95 54.7
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.0e-18 96.7 79 59.5
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.1e-17 93.2 92 50.0
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 7.3e-17 90.5 64 65.6
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.6e-16 88.2 61 63.9
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 6.2e-16 87.4 92 48.9
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 8.9e-15 83.6 66 57.6
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.4e-12 76.3 52 71.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 1.4e-12 76.3 52 71.2
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 2.4e-12 75.5 69 53.6
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 3.2e-12 75.1 99 39.4
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.7e-11 72.0 57 54.4
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.0e-10 70.1 69 42.0
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 6.6e-10 67.4 69 40.6
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 2.5e-09 65.5 67 41.8
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 2.1e-08 62.4 40 65.0
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 9.0e-07 57.0 73 31.5


User provided reference genes

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