Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 7.6e-256 886.7 466 100.0
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.9e-254 882.1 466 99.6
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 6.2e-250 867.1 466 97.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.6e-229 798.1 466 91.0
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 6.7e-228 793.9 467 87.8
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.4e-225 785.4 466 90.3
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.8e-212 740.3 468 83.1
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.7e-207 726.1 466 82.6
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.7e-205 718.0 469 81.9
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.0e-204 715.3 468 82.3
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 3.7e-202 708.4 469 78.7
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.2e-200 703.4 468 77.4
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 3.3e-198 695.3 469 76.3
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 5.5e-198 694.5 468 79.5
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.1e-197 692.6 469 79.1
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 1.4e-196 689.9 468 79.9
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 1.8e-196 689.5 469 76.3
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.8e-196 689.5 468 79.1
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.3e-196 689.1 468 79.5
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 3.0e-196 688.7 468 78.0
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 4.4e-195 684.9 465 77.4
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 5.7e-195 684.5 469 76.5
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 7.5e-195 684.1 486 75.3
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 8.3e-194 680.6 467 76.4
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 1.1e-193 680.2 420 83.3
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.2e-193 678.7 468 75.9
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 9.2e-193 677.2 468 75.6
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.0e-192 676.0 471 76.6
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.7e-191 672.9 468 74.6
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.9e-190 669.5 470 77.9
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.2e-189 666.8 469 76.5
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 1.6e-189 666.4 476 76.9
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 8.0e-189 664.1 468 74.4
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 3.1e-188 662.1 469 74.0
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 8.9e-188 660.6 469 74.4
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 8.9e-188 660.6 465 74.4
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.2e-187 660.2 465 76.6
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.5e-187 659.8 469 74.0
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 2.6e-187 659.1 469 75.5
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.6e-187 659.1 466 74.2
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 4.4e-187 658.3 468 72.4
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 5.8e-187 657.9 465 73.5
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 7.5e-187 657.5 469 74.8
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 4.9e-186 654.8 469 71.6
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 1.1e-185 653.7 469 75.5
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.9e-185 652.9 427 78.0
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.6e-184 649.8 469 74.8
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.6e-184 649.8 468 74.8
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 2.7e-184 649.0 468 75.0
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.5e-184 648.7 468 70.3
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 6.0e-184 647.9 427 77.3
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 6.0e-184 647.9 469 72.3
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.7e-183 646.4 465 74.4
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 2.3e-183 646.0 470 73.4
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 2.3e-183 646.0 469 74.6
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 3.0e-183 645.6 469 72.7
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 3.9e-183 645.2 416 78.6
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 5.0e-183 644.8 448 75.7
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 8.6e-183 644.0 421 77.0
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 3.3e-182 642.1 469 74.4
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 3.3e-182 642.1 468 72.4
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 3.3e-182 642.1 469 73.1
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 4.3e-182 641.7 420 77.1
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.2e-181 640.2 468 69.7
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 1.6e-181 639.8 468 70.1
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 6.2e-181 637.9 463 72.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 6.2e-181 637.9 468 71.2
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.4e-180 636.7 514 66.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 1.4e-180 636.7 496 69.0
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.2e-179 633.6 469 72.3
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.0e-179 632.9 417 77.0
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 2.0e-179 632.9 468 70.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 2.9e-178 629.0 468 73.3
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 3.7e-178 628.6 469 71.6
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.7e-178 628.6 470 72.1
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 1.6e-176 623.2 466 72.3
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.1e-176 622.9 468 69.0
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 4.6e-176 621.7 469 71.0
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 4.6e-176 621.7 497 68.8
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.3e-175 619.4 469 69.1
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 5.1e-175 618.2 469 70.6
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 5.1e-175 618.2 469 70.6
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 5.1e-175 618.2 469 70.6
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 6.6e-175 617.8 469 69.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 6.6e-175 617.8 468 71.2
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 8.6e-175 617.5 469 70.4
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.1e-174 617.1 469 70.8
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.5e-174 616.7 469 69.3
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.9e-174 616.3 401 75.6
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 3.3e-174 615.5 470 71.1
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 4.3e-174 615.1 467 68.3
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 4.3e-174 615.1 469 70.1
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 5.2e-172 608.2 470 71.1
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 8.9e-172 607.4 470 69.8
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 8.9e-172 607.4 470 69.8
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.5e-171 606.7 420 72.9
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 3.4e-171 605.5 452 70.1
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 7.6e-171 604.4 468 68.2
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 2.2e-170 602.8 469 68.9
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.4e-169 600.1 468 67.9
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 4.1e-169 598.6 399 75.2
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 9.2e-169 597.4 492 67.5
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.2e-168 597.0 469 69.9
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 8.6e-167 590.9 453 67.1
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 6.2e-165 584.7 468 66.5
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.3e-162 577.0 415 72.0
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 3.5e-160 568.9 458 65.7
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 5.6e-158 561.6 467 66.4
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.1e-157 559.7 417 66.9
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.7e-154 550.1 399 71.7
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 7.9e-144 514.6 316 82.3
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.3e-135 486.5 385 69.9
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 3.1e-132 476.1 414 58.9
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.0e-127 461.1 417 56.4
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.0e-122 442.2 457 53.8
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 6.5e-122 441.8 398 55.3
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 8.8e-103 378.3 414 51.9
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 2.7e-96 356.7 283 63.3
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.7e-96 355.9 264 73.5
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.2e-91 341.3 535 37.9
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.5e-73 280.4 188 74.5
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 3.5e-67 260.0 273 57.5
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 6.6e-58 229.2 263 55.5
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 8.6e-58 228.8 263 55.5
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.3e-49 199.9 207 56.0
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.1e-43 181.0 172 59.9
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 1.4e-39 168.3 201 48.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.4e-38 163.7 145 60.0
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.4e-38 163.3 126 72.2
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 3.0e-34 150.6 178 48.9
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 9.9e-30 135.6 381 29.4
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 9.0e-23 112.5 102 57.8
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.8e-18 98.2 57 87.7
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.0e-14 84.7 69 68.1
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 7.2e-12 76.3 59 62.7
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 9.0e-07 59.3 70 58.6


User provided reference genes

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