Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.2e-241 838.6 429 100.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 7.8e-239 830.1 429 98.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.9e-238 827.8 429 98.1
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-218 762.7 429 89.0
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.3e-213 744.6 429 87.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.4e-200 702.2 429 82.5
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.3e-198 695.7 429 80.7
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.1e-198 694.5 429 79.7
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.5e-197 693.0 429 79.7
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.5e-197 693.0 435 80.2
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-194 682.9 432 80.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 5.8e-194 681.0 440 82.0
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.1e-191 672.5 429 78.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-190 670.2 429 81.1
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.9e-189 666.0 425 76.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.3e-189 664.8 430 77.2
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.5e-186 654.8 425 76.9
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 5.9e-186 654.4 425 77.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.0e-185 653.7 429 76.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.3e-185 653.3 430 75.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 4.2e-184 648.3 425 76.7
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.4e-184 647.1 425 76.0
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 9.4e-184 647.1 430 75.1
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 9.4e-184 647.1 429 75.1
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.2e-183 646.7 422 75.4
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.1e-183 646.0 429 73.2
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 7.9e-183 644.0 424 75.2
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.8e-182 642.9 430 73.5
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-182 642.9 425 75.5
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.3e-182 642.5 425 75.3
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 6.7e-182 641.0 425 74.1
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 8.8e-182 640.6 421 75.1
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 8.8e-182 640.6 425 74.6
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.0e-181 639.4 425 73.6
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.3e-181 638.3 424 75.5
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.7e-180 636.3 425 74.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 2.8e-180 635.6 425 74.8
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.7e-180 635.2 425 73.6
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 4.8e-180 634.8 433 75.1
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.4e-179 633.3 425 74.6
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.4e-179 633.3 425 74.1
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.3e-179 631.3 425 73.9
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 6.9e-179 630.9 422 73.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 9.1e-179 630.6 425 73.9
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 9.1e-179 630.6 425 73.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 9.1e-179 630.6 425 74.1
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 3.4e-178 628.6 429 72.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.5e-178 628.2 425 72.7
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 7.7e-178 627.5 425 73.4
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.5e-177 624.4 422 72.5
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.5e-176 622.5 423 76.8
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.2e-176 622.1 422 72.5
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 5.5e-176 621.3 422 72.3
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 7.2e-176 620.9 425 72.7
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 7.9e-175 617.5 427 73.5
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.0e-174 617.1 425 73.2
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.0e-174 617.1 429 71.6
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.9e-174 615.1 427 71.2
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.7e-174 614.4 425 71.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.3e-173 612.1 425 71.3
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 4.4e-173 611.7 426 71.6
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-172 610.1 425 71.5
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.7e-172 608.6 425 71.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.8e-172 608.2 428 71.0
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.4e-171 605.9 427 71.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.4e-171 605.9 459 68.2
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.5e-170 602.1 429 72.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 5.9e-170 601.3 426 71.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.9e-169 599.0 425 70.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.9e-169 599.0 422 72.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.9e-169 599.0 464 66.2
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.1e-167 592.8 434 69.8
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.6e-167 592.0 427 70.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.2e-166 588.2 427 69.6
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.7e-165 584.7 425 68.7
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.7e-165 583.9 429 68.8
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 9.1e-163 577.4 426 68.1
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.2e-162 577.0 458 65.9
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.2e-162 577.0 403 70.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.6e-162 576.6 425 66.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 3.5e-162 575.5 422 67.3
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.3e-161 573.5 427 67.9
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.5e-160 569.3 426 68.1
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 2.0e-157 559.7 427 66.5
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 3.3e-157 558.9 425 68.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.4e-155 553.5 426 66.2
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.4e-155 553.5 440 66.6
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-155 553.1 427 65.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 7.0e-155 551.2 430 65.1
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.5e-154 548.5 426 64.1
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 4.5e-154 548.5 383 73.9
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 5.9e-154 548.1 427 64.6
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.9e-154 548.1 425 64.0
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.9e-154 548.1 425 65.9
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 7.7e-154 547.7 426 64.6
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.0e-153 547.4 426 64.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 3.8e-153 545.4 423 64.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.5e-153 544.3 425 65.6
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 5.5e-152 541.6 426 66.2
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.6e-151 540.0 425 65.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.2e-149 533.9 425 63.5
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.0e-149 533.1 425 63.3
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.0e-149 533.1 425 63.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 9.8e-149 530.8 422 61.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.8e-148 529.3 426 63.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.7e-148 528.9 425 62.8
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 8.3e-148 527.7 425 63.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.4e-147 526.9 311 81.4
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 7.0e-147 524.6 426 62.7
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 7.0e-147 524.6 426 62.2
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.6e-146 523.5 324 78.4
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 4.5e-146 521.9 426 62.4
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 7.7e-146 521.2 425 64.9
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.3e-145 519.6 426 62.0
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 4.2e-144 515.4 426 61.3
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.4e-142 510.4 425 60.9
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 8.9e-142 507.7 383 66.3
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.7e-141 505.0 426 61.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.4e-139 500.4 395 65.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 7.8e-138 494.6 353 68.6
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.9e-136 490.0 447 59.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.3e-126 456.4 427 54.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 3.1e-126 456.1 424 55.4
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.4e-125 452.6 427 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.2e-124 449.9 451 52.5
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 5.1e-121 438.7 390 61.5
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.7e-119 432.2 400 59.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 8.3e-116 421.4 430 52.3
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 7.8e-114 414.8 239 85.4
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.7e-111 405.6 241 82.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.4e-108 395.2 284 69.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.3e-105 386.7 431 54.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-102 376.3 355 56.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 9.0e-102 374.8 324 60.5
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.4e-99 367.5 356 55.3
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.0e-76 291.6 430 40.0
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-71 274.6 192 75.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-68 264.2 214 64.0
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 7.2e-67 258.8 325 46.5
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.8e-63 246.1 333 39.9
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 8.8e-57 225.3 194 60.8
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 5.3e-54 216.1 359 40.4
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 8.0e-50 202.2 194 55.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 8.8e-49 198.7 304 41.8
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.8e-46 191.0 143 65.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 7.7e-45 185.7 251 46.2
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 5.2e-33 146.4 323 30.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 9.8e-32 142.1 196 44.4
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.7e-31 141.4 105 68.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.0e-26 122.5 122 50.0
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.4e-24 117.1 76 71.1
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.4e-22 111.7 78 65.4
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.4e-22 111.7 78 65.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-22 111.3 124 46.8
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.6e-16 90.9 66 71.2
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.9e-15 87.4 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 7.8e-13 79.3 120 45.0
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.1e-09 68.9 53 62.3
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.4e-09 68.6 53 67.9
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 8.9e-09 65.9 37 75.7
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.9e-09 65.9 133 36.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-08 65.5 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-08 65.5 49 65.3
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 2.6e-08 64.3 202 26.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 3.4e-08 63.9 205 27.8
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 4.4e-08 63.5 205 27.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.4e-08 63.5 205 28.8
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 4.4e-08 63.5 202 26.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 5.8e-08 63.2 205 27.3
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 5.8e-08 63.2 202 26.2
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 5.8e-08 63.2 202 26.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 7.5e-08 62.8 202 26.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 7.5e-08 62.8 202 26.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 9.8e-08 62.4 202 26.2
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 1.3e-07 62.0 205 29.3
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 1.3e-07 62.0 205 29.3
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 1.7e-07 61.6 205 27.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 1.7e-07 61.6 205 27.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 1.7e-07 61.6 205 27.8
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.7e-07 61.6 205 27.3
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 2.2e-07 61.2 48 58.3


User provided reference genes

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