Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.0e-203 712.2 354 100.0
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 1.4e-201 706.1 354 98.9
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 3.6e-197 691.4 353 97.2
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 2.6e-192 675.2 351 94.0
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.2e-190 668.3 353 93.2
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 3.0e-188 661.8 351 92.6
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.6e-187 658.7 351 92.0
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 5.0e-175 617.8 351 84.9
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.1e-169 600.1 352 82.7
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.3e-167 593.2 351 80.6
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.9e-167 592.0 352 81.0
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.8e-167 591.7 352 81.0
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 5.0e-167 591.3 352 81.2
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 1.6e-165 586.3 353 79.9
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 4.7e-165 584.7 346 81.8
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.8e-164 582.8 351 79.8
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 4.0e-164 581.6 352 79.3
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.2e-163 580.1 348 82.5
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 3.4e-163 578.6 349 80.5
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 7.5e-163 577.4 349 81.4
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.3e-162 576.6 351 79.8
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.2e-162 575.9 349 81.4
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.9e-162 574.7 349 80.8
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 6.4e-162 574.3 350 79.4
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 1.8e-161 572.8 347 78.4
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 2.4e-161 572.4 346 79.2
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 2.4e-161 572.4 350 78.6
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.4e-161 572.4 346 79.5
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 2.4e-161 572.4 349 80.8
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 5.4e-161 571.2 353 78.2
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 7.0e-161 570.9 347 79.0
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 9.2e-161 570.5 346 79.2
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 2.0e-160 569.3 350 79.1
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.7e-160 568.9 348 77.9
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 4.6e-160 568.2 348 77.6
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 7.8e-160 567.4 351 76.9
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 7.8e-160 567.4 349 79.7
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.3e-159 565.8 349 80.2
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 3.9e-159 565.1 351 77.2
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 5.0e-159 564.7 352 77.6
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 5.0e-159 564.7 346 76.9
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 6.6e-159 564.3 353 77.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 8.6e-159 563.9 348 78.4
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 1.5e-158 563.1 348 78.4
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 2.5e-158 562.4 348 77.0
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 2.5e-158 562.4 346 76.6
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 2.5e-158 562.4 349 77.9
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 4.3e-158 561.6 348 76.4
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.3e-158 561.6 361 77.6
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 7.3e-158 560.8 348 76.1
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 9.5e-158 560.5 348 76.1
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 9.5e-158 560.5 348 77.3
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 1.2e-157 560.1 348 76.4
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.2e-157 560.1 351 76.9
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.1e-157 559.3 349 76.5
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 2.8e-157 558.9 327 81.0
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 4.7e-157 558.1 347 78.4
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 4.7e-157 558.1 349 76.8
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 6.2e-157 557.8 352 75.9
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 6.2e-157 557.8 349 78.8
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 8.0e-157 557.4 349 75.6
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 8.0e-157 557.4 349 75.9
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 3.1e-156 555.4 348 75.9
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 4.0e-156 555.1 348 75.9
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 5.2e-156 554.7 349 76.2
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 8.9e-156 553.9 352 76.1
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 8.9e-156 553.9 351 76.1
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.2e-155 553.5 349 75.6
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.2e-155 553.5 348 75.9
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 4.9e-154 548.1 348 75.0
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 2.4e-153 545.8 345 76.2
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 4.1e-153 545.0 348 74.4
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 5.4e-153 544.7 350 75.7
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 7.0e-153 544.3 348 73.6
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 9.2e-153 543.9 343 74.9
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 9.2e-153 543.9 353 75.9
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 2.7e-152 542.3 349 73.9
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 3.5e-152 542.0 348 73.9
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 4.6e-152 541.6 347 76.4
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 6.0e-152 541.2 345 73.9
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 7.8e-152 540.8 349 74.2
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.7e-151 539.7 347 76.1
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 1.7e-151 539.7 348 75.6
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 6.6e-151 537.7 352 73.3
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 6.6e-151 537.7 346 76.3
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 6.6e-151 537.7 348 73.0
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.5e-150 535.8 348 73.6
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 3.3e-150 535.4 348 73.9
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 4.3e-150 535.0 347 73.5
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.3e-150 535.0 348 73.6
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 4.7e-149 531.6 351 74.1
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.4e-148 530.0 347 74.9
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.3e-148 529.3 348 72.7
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 3.1e-148 528.9 347 74.6
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 3.1e-148 528.9 350 75.4
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 4.0e-148 528.5 350 74.0
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 8.9e-148 527.3 351 72.9
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 2.6e-147 525.8 386 69.2
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 7.5e-147 524.2 350 72.3
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 7.5e-147 524.2 351 77.5
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 3.7e-146 521.9 350 73.4
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.9e-146 521.5 388 66.8
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.0e-143 513.8 347 71.2
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 5.1e-143 511.5 372 68.5
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 4.7e-141 505.0 344 71.2
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 4.4e-139 498.4 318 77.4
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 1.1e-137 493.8 349 70.2
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 5.1e-135 485.0 355 68.7
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 4.3e-134 481.9 349 69.1
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 5.8e-131 471.5 341 65.7
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 2.4e-129 466.1 270 84.1
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 3.9e-127 458.8 286 77.3
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 8.7e-127 457.6 268 81.7
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 6.2e-125 451.4 333 64.3
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.5e-123 446.8 348 63.2
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 3.8e-122 442.2 269 78.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.1e-118 430.6 269 76.6
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 7.6e-115 417.9 269 77.0
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.6e-112 410.2 270 72.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 3.9e-111 405.6 346 59.0
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 5.1e-111 405.2 291 66.7
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 6.5e-106 388.3 332 62.3
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.4e-105 387.1 340 57.9
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 2.3e-103 379.8 236 77.1
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 5.1e-103 378.6 257 72.0
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 6.3e-101 371.7 267 65.9
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.9e-98 362.8 353 57.8
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 8.8e-95 351.3 282 62.4
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.4e-92 344.0 357 52.1
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 9.1e-92 341.3 348 52.3
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 2.0e-86 323.6 204 75.0
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 2.0e-86 323.6 350 51.7
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.8e-82 309.3 236 69.9
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 3.0e-79 299.7 350 48.6
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 3.9e-79 299.3 346 48.8
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.3e-69 267.7 208 67.8
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.2e-62 244.6 215 60.0
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.3e-61 241.1 166 69.3
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 9.2e-52 208.4 131 77.9
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 2.0e-51 207.2 194 55.7
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 2.1e-48 197.2 116 77.6
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 5.4e-36 156.0 116 62.9
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.1e-28 131.7 63 96.8
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 9.5e-25 118.6 186 40.3
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 1.5e-22 111.3 65 76.9
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 1.3e-21 108.2 70 70.0
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 1.7e-18 97.8 64 68.8
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 7.3e-09 65.9 40 70.0
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 3.6e-08 63.5 43 62.8
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 1.1e-07 62.0 85 44.7
CAN.G1057.11 Capsicum annuum HOM05D004929 ORTHO05D115892 2.4e-07 60.8 110 34.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 7.6e-06 55.8 229 25.8


User provided reference genes

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