Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037880 Solanum pennellii HOM05D004017 ORTHO05D004612 4.0e-60 234.6 118 100.0
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.6e-21 105.1 70 78.6
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.4e-20 103.2 70 78.6
Sopen02g028020 Solanum pennellii HOM05D004017 ORTHO05D004612 1.8e-20 102.8 68 79.4
Sopen01g045030 Solanum pennellii HOM05D004017 ORTHO05D004612 3.1e-20 102.1 83 67.5
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 3.1e-20 102.1 70 77.1
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 5.8e-19 97.8 69 76.8
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 7.6e-19 97.4 69 76.8
Sopen02g027550 Solanum pennellii HOM05D004017 ORTHO05D004612 1.1e-17 93.6 87 64.4
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.4e-17 93.2 72 72.2
Sopen02g033630 Solanum pennellii HOM05D000936 ORTHO05D015151 3.0e-15 85.5 68 64.7
Solyc01g102630.4 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.9e-15 85.1 73 65.8
Sopen02g033740 Solanum pennellii HOM05D004017 ORTHO05D015151 8.7e-15 84.0 68 64.7
PGSC0003DMG400023778 Solanum tuberosum HOM05D004017 ORTHO05D004612 2.1e-13 79.3 55 74.5
Sopen02g027130 Solanum pennellii HOM05D004017 ORTHO05D004612 8.1e-13 77.4 57 71.9
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.5e-11 73.2 64 60.9
Sopen02g027270 Solanum pennellii HOM05D004017 ORTHO05D004612 2.6e-11 72.4 49 79.6
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 4.5e-11 71.6 64 57.8
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 7.6e-11 70.9 60 60.0
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 9.9e-11 70.5 59 62.7
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 2.9e-10 68.9 64 59.4
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.8e-10 68.6 64 64.1
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.8e-10 68.6 64 64.1
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 4.9e-10 68.2 64 57.8
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 4.9e-10 68.2 57 66.7
Solyc02g090045.1 Solanum lycopersicum HOM05D004017 ORTHO05D004612 1.4e-09 66.6 46 73.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.9e-09 66.2 64 54.7
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 2.4e-09 65.9 63 60.3
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 3.2e-09 65.5 59 52.5
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 4.2e-09 65.1 56 58.9
Glyma.11G086300 Glycine max HOM05D004017 ORTHO05D004612 7.1e-09 64.3 59 52.5
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 9.3e-09 63.9 72 48.6
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 9.3e-09 63.9 60 53.3
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.6e-08 63.2 59 50.8
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.6e-08 63.2 56 57.1
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.6e-08 63.2 60 56.7
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 1.6e-08 63.2 57 54.4
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 2.1e-08 62.8 58 62.1
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 2.1e-08 62.8 60 55.0
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.1e-08 62.8 60 55.0
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.1e-08 62.8 60 55.0
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 2.7e-08 62.4 64 51.6
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.7e-08 62.4 65 56.9
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.7e-08 62.4 65 56.9
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 2.7e-08 62.4 82 47.6
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.7e-08 62.4 60 58.3
Ah.03g142850 Amaranthus hybridus HOM05D004017 ORTHO05D004612 4.6e-08 61.6 54 53.7
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 6.0e-08 61.2 59 50.8
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 6.0e-08 61.2 59 49.2
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 1.0e-07 60.5 60 55.0
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 1.0e-07 60.5 60 55.0
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 1.0e-07 60.5 58 55.2
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 1.0e-07 60.5 59 47.5
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.0e-07 60.5 60 56.7
MD15G1230500 Malus domestica HOM05D004017 ORTHO05D004612 1.3e-07 60.1 60 55.0
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 1.3e-07 60.1 60 60.0
Sopen02g031130 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-07 60.1 42 73.8
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 1.8e-07 59.7 58 53.4
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.8e-07 59.7 60 53.3
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.8e-07 59.7 60 46.7
Lalb_Chr16g0380071 Lupinus albus HOM05D004017 ORTHO05D004612 1.8e-07 59.7 59 49.2
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 2.3e-07 59.3 60 55.0
PGSC0003DMG401018040 Solanum tuberosum HOM05D004017 ORTHO05D004612 2.3e-07 59.3 46 58.7
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 2.3e-07 59.3 59 59.3
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 3.0e-07 58.9 60 60.0
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 3.0e-07 58.9 60 51.7
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 3.9e-07 58.5 56 50.0
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 3.9e-07 58.5 56 51.8
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 3.9e-07 58.5 58 53.4
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 3.9e-07 58.5 70 47.1
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 3.9e-07 58.5 57 50.9
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 5.1e-07 58.2 59 49.2
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 5.1e-07 58.2 59 49.2
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 5.1e-07 58.2 59 45.8
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 6.7e-07 57.8 82 45.1
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.1e-06 57.0 59 45.8
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.9e-06 56.2 58 55.2
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 1.9e-06 56.2 49 59.2
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 1.9e-06 56.2 64 51.6
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 1.9e-06 56.2 64 50.0
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 3.3e-06 55.5 60 53.3
arahy.Tifrunner.gnm1.ann1.6PZ0D3 Arachis hypogaea HOM05D004017 ORTHO05D004612 4.3e-06 55.1 59 47.5
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 7.4e-06 54.3 60 51.7
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 9.6e-06 53.9 64 48.4


User provided reference genes

Program Settings