Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037100 Solanum pennellii HOM05D004017 ORTHO05D037621 4.5e-35 150.6 71 100.0
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 2.3e-18 95.1 61 73.8
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 2.3e-18 95.1 61 73.8
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 9.5e-17 89.7 61 70.5
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.6e-16 87.8 61 68.9
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 6.2e-16 87.0 61 68.9
Solyc02g091620.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 1.2e-14 82.8 60 65.0
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.7e-13 79.0 61 63.9
Sopen02g027550 Solanum pennellii HOM05D004017 ORTHO05D004612 1.7e-13 79.0 62 64.5
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 2.9e-13 78.2 59 64.4
Solyc02g084250.4 Solanum lycopersicum HOM05D027859 ORTHO05D004612 3.7e-13 77.8 64 64.1
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 8.3e-13 76.6 52 67.3
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 1.4e-12 75.9 61 60.7
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.9e-12 75.5 54 68.5
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 2.4e-12 75.1 54 66.7
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.4e-12 75.1 61 62.3
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 4.1e-12 74.3 61 59.0
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 4.1e-12 74.3 55 63.6
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 4.1e-12 74.3 55 63.6
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 5.4e-12 73.9 61 57.4
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 7.1e-12 73.6 61 57.4
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 7.1e-12 73.6 61 57.4
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 7.1e-12 73.6 55 63.6
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.6e-11 72.4 54 63.0
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 1.6e-11 72.4 55 63.6
Atru.chr3.128 Acer truncatum HOM05D004017 ORTHO05D004612 2.1e-11 72.0 54 64.8
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 2.1e-11 72.0 55 60.0
Glyma.11G086300 Glycine max HOM05D004017 ORTHO05D004612 2.7e-11 71.6 61 55.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.7e-11 71.6 61 55.7
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 3.5e-11 71.2 61 59.0
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 3.5e-11 71.2 56 64.3
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 3.5e-11 71.2 55 61.8
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 4.6e-11 70.9 55 63.6
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 6.0e-11 70.5 61 55.7
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 6.0e-11 70.5 59 59.3
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 7.8e-11 70.1 55 60.0
Lalb_Chr16g0380071 Lupinus albus HOM05D004017 ORTHO05D004612 1.0e-10 69.7 61 55.7
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.0e-10 69.7 61 57.4
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.3e-10 69.3 54 57.4
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.7e-10 68.9 55 61.8
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 2.3e-10 68.6 55 60.0
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.3e-10 68.6 55 60.0
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.3e-10 68.6 55 60.0
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 56.4
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 56.4
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 56.4
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 56.4
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 58.2
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 3.0e-10 68.2 55 60.0
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 6.6e-10 67.0 55 56.4
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.1e-09 66.2 55 58.2
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 1.1e-09 66.2 55 52.7
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.1e-09 66.2 55 52.7
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.5e-09 65.9 55 56.4
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 1.5e-09 65.9 54 59.3
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.9e-09 65.5 55 56.4
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 2.5e-09 65.1 54 53.7
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.5e-09 65.1 55 58.2
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 2.5e-09 65.1 55 56.4
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.5e-09 65.1 54 53.7
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 3.3e-09 64.7 57 52.6
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 3.3e-09 64.7 55 58.2
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 4.3e-09 64.3 61 52.5
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 5.6e-09 63.9 55 56.4
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 5.6e-09 63.9 55 56.4
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 5.6e-09 63.9 55 56.4
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 5.6e-09 63.9 61 49.2
Sopen02g028020 Solanum pennellii HOM05D004017 ORTHO05D004612 5.6e-09 63.9 42 71.4
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 9.5e-09 63.2 55 58.2
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 1.6e-08 62.4 54 59.3
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 1.6e-08 62.4 55 56.4
SalBow6G5056 Salvia bowleyana HOM05D004017 ORTHO05D004612 1.6e-08 62.4 55 56.4
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 1.6e-08 62.4 61 49.2
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 2.1e-08 62.0 55 58.2
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.6e-08 61.2 55 54.5
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 3.6e-08 61.2 55 54.5
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 3.6e-08 61.2 53 50.9
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 3.6e-08 61.2 55 50.9
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 6.2e-08 60.5 55 49.1
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 8.1e-08 60.1 55 52.7
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 8.1e-08 60.1 35 74.3
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 1.4e-07 59.3 54 53.7
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.4e-07 59.3 55 52.7
Zm00001eb215200 Zea mays HOM05D004017 ORTHO05D004612 1.4e-07 59.3 55 52.7
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.8e-07 58.9 54 50.0
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 1.8e-07 58.9 36 72.2
Carub.0007s0481 Capsella rubella HOM05D004017 ORTHO05D004612 2.4e-07 58.5 54 55.6
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 4.0e-07 57.8 55 52.7
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 6.8e-07 57.0 54 53.7
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 1.2e-06 56.2 53 49.1
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 2.0e-06 55.5 55 49.1
Sopen02g033160 Solanum pennellii HOM05D058185 ORTHO05D037621 5.8e-06 53.9 40 67.5


User provided reference genes

Program Settings