Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g033710 Solanum pennellii HOM05D004017 ORTHO05D004612 3.3e-36 154.5 75 100.0
Sopen02g033750 Solanum pennellii HOM05D004017 ORTHO05D004612 3.4e-33 144.4 74 94.6
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 2.2e-24 115.2 69 75.4
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 8.5e-24 113.2 69 78.3
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 7.2e-23 110.2 73 72.6
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 8.0e-22 106.7 71 74.6
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.2e-19 98.6 80 62.5
Sopen02g027370 Solanum pennellii HOM05D004017 ORTHO05D004612 1.2e-17 92.8 69 66.7
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.6e-17 92.4 53 79.2
PGSC0003DMG401018040 Solanum tuberosum HOM05D004017 ORTHO05D004612 8.5e-16 86.7 53 79.2
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 2.0e-12 75.5 66 54.5
Sopen01g052810 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-11 72.8 55 65.5
Sopen01g045030 Solanum pennellii HOM05D004017 ORTHO05D004612 1.7e-11 72.4 51 68.6
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 3.7e-11 71.2 65 49.2
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 3.7e-11 71.2 55 65.5
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.4e-10 68.6 66 47.0
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 3.1e-10 68.2 65 50.8
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 4.1e-10 67.8 66 50.0
Solyc01g102630.4 Solanum lycopersicum HOM05D004017 ORTHO05D004612 4.1e-10 67.8 50 66.0
Solyc01g150174.1 Solanum lycopersicum HOM05D043770 ORTHO05D018125 5.3e-10 67.4 44 72.7
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 7.0e-10 67.0 69 49.3
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.2e-09 66.2 64 48.4
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 1.2e-09 66.2 66 45.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 1.2e-09 66.2 66 45.5
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 1.6e-09 65.9 65 50.8
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 2.7e-09 65.1 66 47.0
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 7.7e-09 63.5 66 47.0
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 1.3e-08 62.8 66 42.4
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 1.7e-08 62.4 65 49.2
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.7e-08 62.4 65 44.6
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.7e-08 62.4 66 47.0
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 1.7e-08 62.4 66 45.5
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-08 61.6 53 50.9
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 2.9e-08 61.6 66 45.5
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.8e-08 61.2 66 43.9
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.0e-08 60.8 53 50.9
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.0e-08 60.8 53 50.9
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.0e-08 60.8 53 50.9
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.0e-08 60.8 53 50.9
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 5.0e-08 60.8 66 45.5
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 5.0e-08 60.8 66 43.9
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 6.5e-08 60.5 65 46.2
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 6.5e-08 60.5 66 43.9
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.5e-08 60.5 66 43.9
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 8.5e-08 60.1 53 50.9
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 8.5e-08 60.1 66 40.9
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.5e-08 60.1 66 43.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.5e-07 59.3 67 47.8
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.9e-07 58.9 53 49.1
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 1.9e-07 58.9 67 43.3
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.5e-07 58.5 45 55.6
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.5e-07 58.5 66 47.0
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 2.5e-07 58.5 66 50.0
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 3.2e-07 58.2 68 41.2
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 3.2e-07 58.2 64 46.9
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 4.2e-07 57.8 66 42.4
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 5.5e-07 57.4 66 42.4
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 5.5e-07 57.4 66 39.4
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 5.5e-07 57.4 66 48.5
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 7.2e-07 57.0 66 39.4
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 7.2e-07 57.0 64 46.9
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 9.4e-07 56.6 65 47.7
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 1.2e-06 56.2 65 47.7
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 1.6e-06 55.8 65 47.7
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 1.6e-06 55.8 65 44.6
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 2.1e-06 55.5 66 39.4
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 2.7e-06 55.1 50 50.0
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 2.7e-06 55.1 65 46.2
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.7e-06 55.1 66 42.4
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.6e-06 54.7 65 46.2
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 3.6e-06 54.7 65 46.2
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 4.7e-06 54.3 66 48.5
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 4.7e-06 54.3 50 46.0
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 6.1e-06 53.9 66 39.4
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 8.0e-06 53.5 67 41.8


User provided reference genes

Program Settings