Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 6.5e-145 517.3 251 100.0
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 6.6e-137 490.7 251 94.4
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.3e-120 435.3 254 85.0
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.3e-116 420.6 254 82.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.0e-97 360.5 261 73.2
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.4e-92 340.9 255 70.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.1e-71 273.1 255 58.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.4e-59 233.8 188 59.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.3e-57 226.5 188 57.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.0e-57 226.1 227 49.8
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.0e-57 226.1 227 49.8
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 6.7e-57 224.9 185 56.2
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.5e-56 223.0 203 53.2
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 5.7e-56 221.9 211 51.2
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.4e-56 221.5 251 51.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.3e-55 220.7 225 50.7
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 3.1e-54 216.1 201 53.7
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.1e-54 215.7 195 53.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.1e-54 215.7 186 57.0
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 6.9e-54 214.9 248 46.4
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.5e-53 213.8 205 51.7
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.0e-53 213.4 185 55.7
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.5e-53 212.2 192 51.6
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.5e-53 212.2 192 51.6
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.9e-53 211.8 228 46.9
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.3e-52 210.7 196 54.1
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.3e-52 210.7 230 47.4
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.3e-52 210.7 203 49.8
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-52 210.7 192 53.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-52 210.3 203 51.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-52 210.3 203 51.7
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 2.2e-52 209.9 218 49.1
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 2.9e-52 209.5 202 53.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 5.0e-52 208.8 195 54.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.0e-52 208.8 192 52.1
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 6.5e-52 208.4 223 46.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.4e-51 207.2 192 52.6
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.2e-51 206.1 230 44.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 5.5e-51 205.3 182 54.4
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.4e-51 204.5 200 51.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 51.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 51.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.6e-50 203.8 198 52.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-50 203.8 192 53.1
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 2.7e-50 203.0 185 53.0
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.6e-50 202.6 197 51.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.7e-50 202.2 200 52.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 6.1e-50 201.8 200 52.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 6.1e-50 201.8 200 52.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.1e-50 201.8 222 48.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 7.9e-50 201.4 200 52.5
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 7.9e-50 201.4 192 51.0
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.9e-50 201.4 223 48.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.0e-49 201.1 200 52.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-49 201.1 192 51.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-49 201.1 192 51.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.4e-49 200.7 192 51.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-49 200.3 201 51.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.3e-49 199.9 192 51.6
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.0e-49 199.5 196 49.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.0e-49 199.5 191 52.9
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 8.8e-49 198.0 200 47.5
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.5e-48 197.2 191 51.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.3e-48 196.1 192 50.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-48 196.1 192 50.0
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 3.3e-48 196.1 185 51.9
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.4e-48 195.7 192 52.1
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 9.7e-48 194.5 202 49.0
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-47 193.0 182 53.3
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 3.7e-47 192.6 182 53.3
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.3e-47 191.8 159 57.2
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 8.2e-47 191.4 197 48.2
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.1e-46 191.0 181 50.3
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.0e-46 188.3 182 50.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.2e-45 187.6 185 48.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.6e-45 187.2 176 50.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.3e-44 184.1 206 45.6
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.8e-44 182.6 204 46.1
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 7.2e-43 178.3 192 49.0
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 9.4e-43 177.9 174 50.6
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.8e-41 173.7 188 45.2
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.6e-40 169.9 198 41.4
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 9.7e-40 167.9 196 41.3
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.7e-39 167.2 185 45.4
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.7e-39 167.2 198 41.9
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.2e-39 166.8 185 44.9
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.8e-39 166.4 148 54.1
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.7e-39 166.0 195 43.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 4.8e-39 165.6 197 40.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 8.2e-39 164.9 155 51.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-38 164.5 197 40.6
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-38 164.5 186 39.8
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.1e-38 164.5 192 45.8
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.4e-38 163.3 137 56.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 5.3e-38 162.2 197 41.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 5.3e-38 162.2 137 57.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.3e-38 162.2 206 40.3
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 5.9e-37 158.7 183 40.4
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 7.7e-37 158.3 215 36.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.0e-36 157.9 180 46.7
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.3e-36 157.5 182 47.8
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 6.5e-36 155.2 145 50.3
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.5e-36 155.2 190 41.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.2e-35 152.5 182 42.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.2e-35 152.5 183 39.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 7.2e-35 151.8 146 49.3
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.1e-34 150.2 199 39.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-34 149.1 144 49.3
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.7e-34 149.1 184 38.6
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 8.0e-34 148.3 144 49.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.4e-33 147.5 183 38.3
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-33 147.1 200 38.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.3e-33 146.7 183 38.8
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.0e-33 146.4 144 50.0
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 8.8e-33 144.8 200 38.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 8.8e-33 144.8 181 38.7
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.5e-32 144.1 209 35.9
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 5.7e-32 142.1 182 43.4
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.3e-31 141.0 189 38.6
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.7e-31 140.6 213 37.1
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-31 140.6 203 38.4
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.7e-31 139.4 198 37.9
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.7e-31 139.4 197 41.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.8e-31 139.0 230 35.7
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.3e-31 138.7 185 41.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 8.3e-31 138.3 138 48.6
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.4e-30 137.5 185 41.6
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.8e-30 137.1 208 36.5
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 7.0e-30 135.2 118 45.8
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 7.0e-30 135.2 183 35.5
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.2e-29 134.4 187 36.4
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-29 134.0 138 46.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.0e-29 133.7 197 36.0
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.7e-29 133.3 186 36.6
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.5e-29 132.5 225 33.3
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 5.5e-27 125.6 177 34.5
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.1e-26 123.6 179 37.4
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 3.6e-26 122.9 181 38.7
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 6.1e-26 122.1 176 41.5
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.3e-25 120.2 136 41.2
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.0e-24 117.1 161 39.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-23 114.4 181 34.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-23 114.0 200 33.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.2e-23 113.6 192 33.3
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 5.9e-21 105.5 182 36.3
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.9e-20 103.2 71 66.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.5e-19 100.9 201 33.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 9.5e-19 98.2 212 29.2
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.7e-18 95.9 116 40.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 6.1e-18 95.5 100 44.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 6.1e-18 95.5 116 40.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.2e-16 91.3 116 39.7
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 3.0e-12 76.6 77 51.9
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.1e-09 66.6 177 24.9
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.8e-08 62.4 181 24.9
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.9e-07 60.1 56 51.8
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.4e-07 58.9 81 38.3
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-06 57.4 92 35.9


User provided reference genes

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