Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.2e-203 712.2 399 100.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.1e-197 693.3 397 97.7
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 8.7e-176 620.5 402 89.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.2e-174 614.4 403 87.3
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.0e-171 604.7 403 86.6
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.1e-170 600.9 403 86.6
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.6e-169 599.7 403 85.6
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.9e-168 595.1 400 85.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 9.7e-167 590.5 400 84.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.2e-162 575.5 325 97.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.2e-161 573.5 403 84.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 7.9e-161 570.9 403 84.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.5e-147 524.2 412 75.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.4e-144 516.9 412 73.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.9e-144 515.4 412 72.6
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.0e-140 503.1 412 72.1
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-139 500.0 408 72.8
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.2e-138 495.7 408 72.3
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 8.0e-137 491.1 413 70.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 4.0e-136 488.8 410 70.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.3e-134 483.8 418 70.1
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.3e-134 481.5 406 71.2
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.7e-132 476.1 423 69.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.3e-131 473.8 412 68.9
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.9e-131 472.6 412 69.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.1e-130 470.7 408 68.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 8.0e-129 464.5 412 67.5
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.0e-128 462.2 398 69.1
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.5e-127 460.3 408 69.4
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 5.7e-127 458.4 413 68.5
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 8.3e-126 454.5 406 67.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 3.1e-125 452.6 405 67.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 5.4e-125 451.8 405 69.6
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.4e-125 451.8 411 66.9
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 9.1e-125 451.1 410 66.8
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.2e-124 450.7 406 66.5
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.7e-124 449.5 412 68.2
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.3e-123 446.4 412 67.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.0e-123 445.3 427 65.3
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.5e-122 443.7 418 67.7
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 5.6e-122 441.8 404 65.8
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 7.2e-122 441.4 410 68.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.2e-121 440.7 421 65.3
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.1e-121 439.9 409 64.3
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.0e-120 437.6 409 66.3
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.3e-120 436.4 411 67.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 6.8e-120 434.9 421 64.1
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 6.8e-120 434.9 409 66.3
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 5.7e-119 431.8 403 64.8
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 8.3e-118 427.9 408 64.2
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-117 427.6 408 63.5
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.4e-117 426.4 408 64.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.1e-117 425.6 410 63.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.2e-116 424.1 413 64.4
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.7e-116 422.9 410 63.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 5.9e-116 421.8 410 64.6
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.9e-116 421.8 412 64.3
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 7.8e-116 421.4 408 63.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 7.8e-116 421.4 402 65.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.0e-115 421.0 352 69.6
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.9e-115 419.1 404 64.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 3.9e-115 419.1 339 72.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.0e-115 418.7 427 63.9
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 8.6e-115 417.9 352 69.6
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.9e-114 416.8 404 64.6
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.5e-114 416.4 404 64.6
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.5e-114 416.4 400 64.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.3e-114 416.0 409 60.6
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.3e-114 416.0 409 63.3
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.3e-114 415.6 352 69.3
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 7.3e-114 414.8 404 64.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 7.3e-114 414.8 409 63.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 9.5e-114 414.5 397 63.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.6e-113 413.7 411 63.3
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.1e-113 413.3 419 62.5
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.8e-113 412.9 414 63.5
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 2.8e-113 412.9 399 64.9
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 3.6e-113 412.5 429 63.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 6.2e-113 411.8 408 60.8
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 6.2e-113 411.8 408 62.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.0e-112 411.0 408 62.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 6.8e-112 408.3 417 61.6
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.2e-111 407.5 429 63.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 5.8e-111 405.2 436 60.6
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 3.7e-110 402.5 400 63.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.7e-110 402.5 411 63.7
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 2.4e-109 399.8 424 63.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 2.4e-109 399.8 407 62.4
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 5.4e-109 398.7 429 59.9
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.0e-109 398.3 410 60.5
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 9.2e-109 397.9 412 63.3
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.2e-108 397.5 402 64.2
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.6e-108 397.1 400 62.5
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 4.6e-108 395.6 409 60.6
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-107 393.3 409 60.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 8.6e-107 391.3 428 61.9
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.5e-106 390.6 429 61.3
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.5e-106 390.6 429 61.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.5e-106 389.8 409 60.1
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 4.3e-106 389.0 429 61.1
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 8.1e-105 384.8 429 60.8
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.5e-103 380.6 338 64.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-103 380.2 395 60.3
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.7e-102 375.9 431 58.7
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.1e-101 374.4 329 63.2
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.4e-101 374.0 434 59.2
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.1e-101 372.5 410 58.0
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 5.4e-101 372.1 408 57.4
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.6e-100 370.5 324 68.8
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.3e-99 367.5 442 57.5
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.3e-99 366.7 430 58.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 3.0e-99 366.3 329 66.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 6.6e-99 365.2 400 58.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.1e-98 364.4 412 58.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-97 359.8 315 67.9
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 5.2e-96 355.5 346 61.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-95 354.4 406 55.7
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-95 352.1 403 58.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-94 350.5 360 60.8
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.5e-92 342.8 350 62.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.0e-91 339.7 336 65.5
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-88 331.3 408 55.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.2e-85 319.7 347 56.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.3e-75 287.7 417 47.5
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.1e-74 284.6 346 51.7
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.6e-74 282.3 358 52.8
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 8.1e-73 278.5 356 52.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.8e-71 272.3 238 68.9
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.9e-69 267.3 412 47.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 8.7e-67 258.5 409 45.7
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.0e-64 249.6 407 47.4
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.6e-60 236.1 318 52.2
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.5e-55 219.5 229 58.5
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.3e-51 208.0 207 59.9
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 3.7e-49 199.9 243 49.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-48 197.6 275 53.5
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-48 197.6 275 53.5
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.4e-47 193.4 278 51.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.9e-47 192.6 209 58.4
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-46 190.7 172 57.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.2e-45 186.4 219 56.2
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.2e-45 185.7 342 44.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 7.9e-44 182.2 341 45.2
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 6.7e-43 179.1 374 39.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.1e-40 170.2 346 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.1e-36 157.5 385 37.1
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 5.7e-34 149.4 200 51.0
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.4e-34 149.1 102 74.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 3.2e-29 133.7 107 70.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.2e-28 131.7 148 64.2
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.7e-28 130.6 249 36.5
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 2.7e-23 114.0 117 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.0e-15 87.8 231 29.0
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.7e-10 69.7 43 81.4
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 7.5e-10 69.3 71 60.6
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 7.7e-07 59.3 196 36.7


User provided reference genes

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