Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031640 Solanum pennellii HOM05D005049 ORTHO05D006032 8.1e-218 760.4 456 100.0
PGSC0003DMG400000525 Solanum tuberosum HOM05D005049 ORTHO05D006032 3.6e-210 734.9 456 97.4
Solyc02g086870.4 Solanum lycopersicum HOM05D005049 ORTHO05D006032 7.8e-205 717.2 443 98.0
CAN.G206.31 Capsicum annuum HOM05D005049 ORTHO05D006032 7.4e-187 657.5 456 82.2
Nitab4.5_0005176g0050 Nicotiana tabacum HOM05D005049 ORTHO05D006032 9.0e-177 624.0 476 67.6
Nitab4.5_0003337g0090 Nicotiana tabacum HOM05D005049 ORTHO05D006032 1.2e-173 613.6 456 69.1
Hma1.2p1_0858F.1_g229450 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 1.6e-133 480.3 451 53.9
Dinv35060 Davidia involucrata HOM05D005049 ORTHO05D006032 1.1e-129 467.6 453 54.1
TAR622G0573 Trochodendron aralioides HOM05D005049 ORTHO05D006032 1.4e-124 450.7 455 51.0
Oeu004708.3 Olea europaea HOM05D005049 ORTHO05D006032 1.8e-124 450.3 484 50.2
Prupe.3G284100 Prunus persica HOM05D005049 ORTHO05D006032 4.4e-123 445.7 456 50.9
Nn4g22794 Nelumbo nucifera HOM05D005049 ORTHO05D006032 4.9e-122 442.2 451 51.2
CSS0003936 Camellia sinensis var. sinensis HOM05D005049 ORTHO05D006032 1.1e-121 441.0 453 61.1
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 2.4e-121 439.9 468 50.2
MSTRG.3171 Avicennia marina HOM05D005049 ORTHO05D006032 4.1e-121 439.1 454 51.3
SGA_v2.0_scaffold205G41694 Striga asiatica HOM05D005049 ORTHO05D006032 1.2e-120 437.6 477 48.8
MD17G1034700 Malus domestica HOM05D005049 ORTHO05D006032 5.9e-120 435.3 456 49.3
Actinidia35742 Actinidia chinensis HOM05D005049 ORTHO05D006032 1.0e-119 434.5 444 51.8
Medtr6g007165 Medicago truncatula HOM05D005049 ORTHO05D006032 1.7e-119 433.7 456 49.6
GSVIVG01032478001 Vitis vinifera HOM05D005049 ORTHO05D006032 8.6e-119 431.4 439 50.8
Aqoxy3G01017 Aquilegia oxysepala HOM05D005049 ORTHO05D006032 1.5e-118 430.6 454 48.9
Migut.H00120 Erythranthe guttata HOM05D005049 ORTHO05D006032 1.5e-118 430.6 460 49.8
Lj2g0009991 Lotus japonicus HOM05D005049 ORTHO05D006032 9.5e-118 427.9 471 49.5
Potri.017G073200 Populus trichocarpa HOM05D005049 ORTHO05D006032 2.8e-117 426.4 453 49.4
TPR.G2274 Trifolium pratense HOM05D005049 ORTHO05D006032 1.0e-116 424.5 487 50.9
RcHm_v2.0_Chr2g0171441 Rosa chinensis HOM05D005049 ORTHO05D006032 8.9e-116 421.4 455 49.9
Peaxi162Scf00129g01124 Petunia axillaris HOM05D005049 ORTHO05D006032 2.6e-115 419.9 342 66.1
CiPaw.03G037900 Carya illinoinensis HOM05D005049 ORTHO05D006032 5.8e-115 418.7 454 47.8
Glyma.13G168600 Glycine max HOM05D005049 ORTHO05D006032 7.5e-115 418.3 446 49.3
Duzib147G1079 Durio zibethinus HOM05D005049 ORTHO05D006032 1.3e-114 417.5 460 52.2
EL10Ac2g02398 Beta vulgaris HOM05D005049 ORTHO05D006032 2.2e-114 416.8 453 48.8
Glyma.06G185500 Glycine max HOM05D005049 ORTHO05D006032 2.2e-114 416.8 451 49.7
Phvul.004G014500 Phaseolus vulgaris HOM05D005049 ORTHO05D006032 2.2e-114 416.8 447 48.8
Gohir.A09G026200 Gossypium hirsutum HOM05D005049 ORTHO05D006032 2.9e-114 416.4 462 58.2
VMungo0464G1607 Vigna mungo HOM05D005049 ORTHO05D006032 6.4e-114 415.2 446 49.1
Duzib264G0847 Durio zibethinus HOM05D005049 ORTHO05D006032 1.4e-113 414.1 464 51.7
Eucgr.I01812 Eucalyptus grandis HOM05D005049 ORTHO05D006032 1.4e-113 414.1 456 49.1
Gorai.006G029800 Gossypium raimondii HOM05D005049 ORTHO05D006032 2.4e-113 413.3 463 58.1
ECA238G2197 Erigeron canadensis HOM05D005049 ORTHO05D006032 1.6e-112 410.6 449 50.1
Cfa007428 Carpinus fangiana HOM05D005049 ORTHO05D006032 3.5e-112 409.5 451 47.5
TWI12G0306 Tripterygium wilfordii HOM05D005049 ORTHO05D006032 7.8e-112 408.3 487 45.4
Manes.17G121600 Manihot esculenta HOM05D005049 ORTHO05D006032 6.6e-111 405.2 453 49.4
Ah.11g045070 Amaranthus hybridus HOM05D005049 ORTHO05D006032 1.5e-110 404.1 452 45.8
PGR142G2968 Punica granatum HOM05D005049 ORTHO05D006032 2.5e-110 403.3 455 47.9
Lalb_Chr02g0160341 Lupinus albus HOM05D005049 ORTHO05D006032 3.3e-110 402.9 446 48.4
CsaV3_3G042430 Cucumis sativus L. HOM05D005049 ORTHO05D006032 1.2e-109 401.0 455 48.8
CANSAT64G0408 Cannabis sativa HOM05D005049 ORTHO05D006032 1.6e-109 400.6 446 48.4
MELO3C009957.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.1e-108 397.9 455 48.8
Sed0008163 Sechium edule HOM05D005049 ORTHO05D006032 8.9e-108 394.8 457 47.9
FvH4_6g50640 Fragaria vesca HOM05D005049 ORTHO05D006032 1.5e-107 394.0 449 47.2
arahy.Tifrunner.gnm1.ann1.41NV30 Arachis hypogaea HOM05D005049 ORTHO05D006032 2.0e-107 393.7 459 46.2
MBI16_g40725_MAGBIO Magnolia biondii HOM05D005049 ORTHO05D006032 9.8e-107 391.3 456 46.7
Sc07g0003030 Simmondsia chinensis HOM05D005049 ORTHO05D006032 9.8e-107 391.3 450 46.9
Cpa.g.sc39.89 Carica papaya HOM05D005049 ORTHO05D006032 2.9e-106 389.8 448 46.4
Psat1g056840 Pisum sativum HOM05D005049 ORTHO05D006032 3.7e-106 389.4 419 48.9
Thecc.04G008900 Theobroma cacao HOM05D005049 ORTHO05D006032 3.7e-106 389.4 473 45.0
Haze_14669 Corylus avellana HOM05D005049 ORTHO05D006032 6.4e-106 388.7 482 44.2
arahy.Tifrunner.gnm1.ann1.B7LRKU Arachis hypogaea HOM05D005049 ORTHO05D006032 8.3e-106 388.3 454 46.7
arahy.Tifrunner.gnm1.ann1.EYLE23 Arachis hypogaea HOM05D005049 ORTHO05D006032 3.2e-105 386.3 458 45.9
Zm00001eb153900 Zea mays HOM05D005049 ORTHO05D006032 1.6e-104 384.0 449 44.8
PSO017G6025 Papaver somniferum HOM05D005049 ORTHO05D006032 2.0e-104 383.6 452 45.8
MD09G1034200 Malus domestica HOM05D005049 ORTHO05D006032 1.0e-103 381.3 468 45.9
HanXRQChr07g0198731 Helianthus annuus HOM05D005049 ORTHO05D006032 2.3e-103 380.2 460 46.3
Carub.0007s3535 Capsella rubella HOM05D005049 ORTHO05D006032 5.0e-103 379.0 452 46.5
ATR0730G137 Amborella trichopoda HOM05D005049 ORTHO05D006032 8.6e-103 378.3 454 45.4
HPP92_021346 Vanilla planifolia HOM05D005049 ORTHO05D006032 9.5e-102 374.8 450 45.6
AT5G40280 Arabidopsis thaliana HOM05D005049 ORTHO05D006032 3.6e-101 372.9 451 46.1
BraA04t16979Z Brassica rapa HOM05D005049 ORTHO05D006032 6.2e-101 372.1 452 45.6
THA.LOC104805397 Tarenaya hassleriana HOM05D005049 ORTHO05D006032 6.2e-101 372.1 456 44.5
Aa31LG9G1340 Aethionema arabicum HOM05D005049 ORTHO05D006032 8.1e-101 371.7 451 45.7
Thhalv10027764m.g Eutrema salsugineum HOM05D005049 ORTHO05D006032 8.1e-101 371.7 454 45.2
C04p46950 Brassica napus HOM05D005049 ORTHO05D006032 1.4e-100 370.9 451 45.7
A04p13200 Brassica napus HOM05D005049 ORTHO05D006032 8.9e-100 368.2 455 45.3
PSO478G2829 Papaver somniferum HOM05D005049 ORTHO05D006032 8.9e-100 368.2 464 44.4
Ca_04197_v3 Cicer arietinum L. HOM05D005049 ORTHO05D006032 1.5e-99 367.5 389 50.4
Ciclev10015290m.g Citrus clementina HOM05D005049 ORTHO05D006032 2.0e-99 367.1 447 44.5
BolC4t26289H Brassica oleracea HOM05D005049 ORTHO05D006032 2.2e-98 363.6 459 44.9
FAN14G5348 Fragaria x ananassa HOM05D005049 ORTHO05D006032 1.1e-97 361.3 449 45.0
Sp7g01660 Schrenkiella parvula HOM05D005049 ORTHO05D006032 1.1e-97 361.3 451 44.8
DCAR_015040 Daucus carota HOM05D005049 ORTHO05D006032 2.5e-94 350.1 395 49.6
Lsat_1_v5_gn_2_92181 Lactuca sativa HOM05D005049 ORTHO05D006032 1.2e-93 347.8 449 44.5
SGA_v2.0_scaffold66G22479 Striga asiatica HOM05D005049 ORTHO05D006032 8.1e-93 345.1 381 47.8
A04p15750 Brassica napus HOM05D005049 ORTHO05D006032 8.9e-92 341.7 450 43.8
BraA04t17209Z Brassica rapa HOM05D005049 ORTHO05D006032 8.9e-92 341.7 450 43.8
QL02p076639 Quercus lobata HOM05D005049 ORTHO05D006032 3.5e-88 329.7 656 32.3
AUR62040116 Chenopodium quinoa HOM05D005049 ORTHO05D006032 6.0e-88 328.9 454 42.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 8.7e-87 325.1 423 43.5
vmacro05822 Vaccinium macrocarpon HOM05D005049 ORTHO05D006032 2.8e-85 320.1 599 36.2
Prupe.6G347800 Prunus persica HOM05D005049 ORTHO05D006032 1.3e-82 311.2 410 41.7
Lj7A514T33 Lonicera japonica HOM05D005049 ORTHO05D006032 3.8e-82 309.7 363 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2022 Anthoceros agrestis HOM05D005049 ORTHO05D006032 3.2e-81 306.6 491 37.7
Pp3c14_3780 Physcomitrium patens HOM05D005049 ORTHO05D006032 1.3e-79 301.2 502 36.5
AUR62032496 Chenopodium quinoa HOM05D005049 ORTHO05D006032 8.7e-79 298.5 423 42.3
Cc07_g02250 Coffea canephora HOM05D005049 ORTHO05D006032 3.6e-77 293.1 343 55.4
Hund02271 Selenicereus undatus HOM05D005049 ORTHO05D006032 8.1e-77 292.0 450 40.0
SMO172G0207 Selaginella moellendorffii HOM05D005049 ORTHO05D006032 1.2e-75 288.1 450 36.9
Atru.chr6.2298 Acer truncatum HOM05D005049 ORTHO05D006032 1.5e-75 287.7 203 66.0
CARHR261810 Cardamine hirsuta HOM05D005049 ORTHO05D006032 8.4e-74 282.0 204 66.2
Gohir.D09G025601 Gossypium hirsutum HOM05D005049 ORTHO05D006032 7.1e-73 278.9 348 58.9
BcaB06g27470 Brassica carinata HOM05D005049 ORTHO05D006032 1.6e-72 277.7 199 64.8
Mapoly0123s0027 Marchantia polymorpha HOM05D005049 ORTHO05D006032 6.0e-72 275.8 589 32.9
HPP92_021351 Vanilla planifolia HOM05D005049 ORTHO05D006032 1.2e-67 261.5 167 69.5
Lj9C583G13 Lonicera japonica HOM05D005049 ORTHO05D006032 1.6e-61 241.1 451 35.3
Sabra17G0060100 Salix brachista HOM05D005049 ORTHO05D006032 2.8e-61 240.4 216 56.0
ECA236G0066 Erigeron canadensis HOM05D000454 ORTHO05D006032 4.2e-57 226.5 315 45.1
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 9.3e-57 225.3 477 32.3
CBR_g12691 Chara braunii HOM05D005049 ORTHO05D006032 3.3e-54 216.9 200 51.5
unitig_52.g17670 Utricularia gibba HOM05D005049 ORTHO05D006032 1.8e-52 211.1 451 33.7
PRCOL_00002137 Prasinoderma coloniale HOM05D005049 ORTHO05D006032 7.7e-51 205.7 442 33.3
BcaB06g27754 Brassica carinata HOM05D005049 ORTHO05D006032 3.0e-47 193.7 391 34.5
ClCG10G014210 Citrullus lanatus HOM05D005049 ORTHO05D006032 3.7e-45 186.8 308 39.9
FAN14G3165 Fragaria x ananassa HOM05D005049 ORTHO05D006032 2.2e-42 177.6 171 50.9
Cre14.g612500 Chlamydomonas reinhardtii HOM05D005049 ORTHO05D006032 1.4e-39 168.3 208 42.8
Haze_27246 Corylus avellana HOM05D005049 ORTHO05D006032 5.1e-39 166.4 370 32.4
Rhsim10G0022300 Rhododendron simsii HOM05D005049 ORTHO05D006032 2.6e-38 164.1 176 52.3
Manes.17G121264 Manihot esculenta HOM05D005049 ORTHO05D006032 1.1e-33 148.7 280 35.7
Cc07_g02260 Coffea canephora HOM05D005049 ORTHO05D006032 3.6e-32 143.7 100 63.0
Atru.chr6.2299 Acer truncatum HOM05D005049 ORTHO05D006032 1.4e-28 131.7 94 60.6
FAN02G4030 Fragaria x ananassa HOM05D005049 ORTHO05D006032 7.0e-28 129.4 108 53.7
C04p50070 Brassica napus HOM05D005049 ORTHO05D006032 1.4e-23 115.2 143 44.8
BolC4t26602H Brassica oleracea HOM05D005049 ORTHO05D006032 4.4e-22 110.2 80 58.8
BcaC02g08822 Brassica carinata HOM05D005049 ORTHO05D006032 2.2e-21 107.8 77 59.7
C04p50080 Brassica napus HOM05D005049 ORTHO05D006032 2.4e-20 104.4 77 58.4
COL.COLO4_28950 Corchorus olitorius HOM05D005049 ORTHO05D006032 1.2e-16 92.0 404 23.8
Hma1.2p1_0802F.1_g220350 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 9.8e-14 82.4 136 33.8
Manes.17G121440 Manihot esculenta HOM05D005049 ORTHO05D006032 4.8e-13 80.1 46 73.9
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 9.1e-12 75.9 167 29.9
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 5.9e-11 73.2 164 28.0
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 5.9e-11 73.2 167 29.9
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 8.6e-10 69.3 184 27.7
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 8.6e-10 69.3 183 27.9
SEGI_15966 Sequoiadendron giganteum HOM05D005049 ORTHO05D006032 4.2e-09 67.0 51 64.7
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 9.5e-09 65.9 167 26.9
Glyma.06G243150 Glycine max HOM05D005049 ORTHO05D006032 1.6e-08 65.1 39 76.9
RcHm_v2.0_Chr2g0158171 Rosa chinensis HOM05D005049 ORTHO05D006032 4.0e-07 60.5 102 38.2
Os01g0737800 Oryza sativa ssp. japonica HOM05D005049 ORTHO05D006032 5.2e-07 60.1 65 44.6
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 6.8e-07 59.7 143 30.1
Cfa027041 Carpinus fangiana HOM05D005049 ORTHO05D123379 1.5e-06 58.5 52 48.1
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 5.7e-06 56.6 133 27.1


User provided reference genes

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