Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 2.5e-209 731.9 377 100.0
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 8.4e-205 716.8 377 97.1
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.4e-196 689.5 377 93.4
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.1e-195 685.6 377 92.8
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.9e-194 681.4 377 92.3
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.6e-158 563.1 377 79.3
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 7.3e-140 501.1 377 67.6
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.1e-138 495.7 377 67.1
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.2e-137 493.8 378 68.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.6e-137 492.7 378 65.9
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 1.4e-135 486.9 377 65.8
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 3.2e-135 485.7 377 64.5
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.0e-133 480.7 377 65.5
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 2.3e-133 479.6 376 65.4
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 1.2e-131 473.8 376 64.9
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 3.6e-131 472.2 377 64.2
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 2.3e-130 469.5 385 63.6
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 8.9e-130 467.6 379 64.9
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 5.8e-129 464.9 377 61.8
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 2.9e-128 462.6 377 62.6
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 3.2e-127 459.1 377 63.9
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 5.4e-127 458.4 377 61.5
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 9.2e-127 457.6 380 61.8
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 2.3e-125 453.0 377 62.3
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 3.9e-125 452.2 377 61.8
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 5.1e-125 451.8 382 63.1
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 3.3e-124 449.1 377 62.1
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 3.3e-124 449.1 377 60.7
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 4.3e-124 448.7 377 64.5
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 9.6e-124 447.6 378 61.6
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.6e-123 446.8 381 61.2
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.8e-123 446.0 379 61.7
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.6e-121 439.5 379 60.9
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 9.9e-121 437.6 379 60.4
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.4e-119 433.7 377 58.9
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 2.4e-119 433.0 379 60.7
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.2e-119 432.6 377 60.5
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.2e-119 432.2 382 59.2
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 7.1e-119 431.4 397 60.2
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.1e-118 429.9 379 61.2
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 3.5e-118 429.1 379 59.4
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 5.1e-117 425.2 377 59.2
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 8.7e-117 424.5 377 59.2
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 2.5e-116 422.9 378 59.8
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 2.1e-115 419.9 378 58.5
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 3.6e-115 419.1 379 58.6
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 3.1e-114 416.0 378 58.7
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 9.0e-114 414.5 377 57.3
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.2e-113 414.1 384 58.9
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 1.3e-112 410.6 377 58.6
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.2e-112 409.8 375 57.6
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 2.9e-112 409.5 378 57.9
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 4.9e-112 408.7 377 58.9
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 8.4e-112 407.9 333 60.4
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 8.4e-112 407.9 377 57.0
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 1.9e-111 406.8 378 59.0
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 2.4e-111 406.4 376 57.7
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.2e-111 406.0 377 58.1
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.2e-110 404.1 379 58.0
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 2.1e-110 403.3 382 55.8
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.6e-110 402.1 376 57.2
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 3.3e-108 396.0 381 55.9
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 3.6e-107 392.5 381 57.5
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 2.4e-106 389.8 377 55.4
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 4.0e-106 389.0 382 55.0
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.5e-105 387.1 382 55.8
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.5e-105 385.6 381 55.9
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.1e-103 380.9 381 56.2
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.1e-103 380.9 381 55.1
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.2e-102 377.5 381 54.6
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.6e-102 377.1 399 52.9
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.0e-102 375.2 381 53.8
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.0e-102 375.2 381 53.8
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 5.1e-101 372.1 391 51.4
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 1.1e-100 370.9 381 53.5
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 5.6e-100 368.6 377 52.8
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 9.6e-100 367.9 382 53.1
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.3e-99 367.5 381 53.3
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 1.6e-99 367.1 382 52.4
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 2.1e-99 366.7 377 54.9
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 1.1e-98 364.4 385 53.8
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 1.4e-98 364.0 385 53.0
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 1.8e-98 363.6 385 52.7
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 5.3e-98 362.1 385 53.2
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 4.5e-97 359.0 324 58.3
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 7.6e-97 358.2 380 52.1
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.3e-96 357.5 377 54.1
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 9.3e-95 351.3 405 50.4
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.4e-90 336.7 387 46.3
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 2.2e-88 330.1 388 47.9
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 3.3e-84 316.2 168 98.2
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 5.7e-84 315.5 381 48.8
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.4e-77 294.3 283 56.9
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 8.2e-75 285.0 257 56.0
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 4.5e-73 279.3 257 56.4
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.4e-71 274.2 317 51.4
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.5e-71 273.5 199 65.3
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 2.5e-71 273.5 392 43.9
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 1.6e-65 254.2 391 40.2
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.0e-64 251.5 225 62.7
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.0e-56 224.9 381 40.9
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 9.4e-55 218.4 380 40.0
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 4.7e-54 216.1 169 68.0
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 7.5e-52 208.8 170 63.5
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.5e-49 199.5 233 46.8
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 4.7e-46 189.5 378 37.6
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 6.1e-46 189.1 178 53.9
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.4e-45 188.0 166 54.8
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 3.3e-39 166.8 279 35.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.8e-34 151.0 161 53.4
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 7.3e-31 139.0 160 50.6
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.6e-30 136.7 189 42.3
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.4e-29 134.8 189 42.3
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.4e-29 134.8 82 81.7
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 2.3e-29 134.0 159 45.3
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 8.9e-29 132.1 168 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 9.5e-23 112.1 165 35.8
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.2e-22 111.7 142 50.0
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.0e-16 92.0 104 46.2
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 8.6e-16 89.0 92 50.0
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 3.1e-13 80.5 81 48.1
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 4.0e-13 80.1 70 55.7
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 2.1e-09 67.8 438 23.1
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-06 58.5 68 45.6


User provided reference genes

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