Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028880 Solanum pennellii HOM05D010460 ORTHO05D037645 0.0e+00 1151.3 654 100.0
Sopen02g028900 Solanum pennellii HOM05D037418 ORTHO05D037645 3.8e-51 207.2 426 38.7
Sopen02g028920 Solanum pennellii HOM05D001465 ORTHO05D013629 1.8e-24 118.6 83 80.7
Solyc02g084080.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 2.0e-23 115.2 93 65.6
Solyc02g084160.3 Solanum lycopersicum HOM05D010460 ORTHO05D003043 1.7e-22 112.1 91 64.8
Solyc02g084113.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 4.1e-21 107.5 165 40.6
Solyc02g084173.1 Solanum lycopersicum HOM05D037418 ORTHO05D037645 1.6e-17 95.5 175 38.3
Solyc00g284510.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 1.5e-15 89.0 90 62.2
Solyc02g084110.1 Solanum lycopersicum HOM05D010460 ORTHO05D030274 1.5e-15 89.0 71 62.0
Sopen02g012350 Solanum pennellii HOM05D010460 ORTHO05D014683 3.3e-15 87.8 90 60.0
Sopen02g012330 Solanum pennellii HOM05D010460 ORTHO05D003043 4.4e-15 87.4 90 61.1
Sopen02g012320 Solanum pennellii HOM05D010460 ORTHO05D014683 5.7e-15 87.0 90 60.0
Sopen02g028870 Solanum pennellii HOM05D010460 ORTHO05D030274 9.7e-15 86.3 71 63.4
Solyc00g007350.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 1.3e-14 85.9 90 60.0
PGSC0003DMG400041733 Solanum tuberosum HOM05D010460 ORTHO05D003043 1.7e-14 85.5 75 68.0
Solyc00g012540.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 3.7e-14 84.3 90 58.9
Sopen02g012300 Solanum pennellii HOM05D010460 ORTHO05D010130 6.3e-14 83.6 90 61.1
Sopen02g012220 Solanum pennellii HOM05D010460 ORTHO05D014683 8.2e-14 83.2 90 57.8
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 1.4e-13 82.4 53 69.8
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 2.4e-13 81.6 87 54.0
Solyc00g007450.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 3.1e-13 81.3 90 60.0
Solyc00g198360.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 3.1e-13 81.3 90 60.0
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 9.1e-13 79.7 87 51.7
PGSC0003DMG400001475 Solanum tuberosum HOM05D011612 ORTHO05D013629 2.6e-12 78.2 133 42.1
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 5.9e-12 77.0 86 51.2
PGSC0003DMG400003555 Solanum tuberosum HOM05D002848 ORTHO05D030274 7.7e-12 76.6 80 60.0
PGSC0003DMG400003556 Solanum tuberosum HOM05D002848 ORTHO05D003043 1.0e-11 76.3 61 65.6
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.9e-11 74.7 65 58.5
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 3.8e-11 74.3 56 67.9
PGSC0003DMG400023779 Solanum tuberosum HOM05D011612 ORTHO05D013629 6.5e-11 73.6 75 58.7
Actinidia26196 Actinidia chinensis HOM05D001465 ORTHO05D001434 4.2e-10 70.9 62 62.9
Solyc02g084200.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 7.2e-10 70.1 56 66.1
Sopen02g028940 Solanum pennellii HOM05D002848 ORTHO05D003043 1.2e-09 69.3 56 66.1
Nitab4.5_0003247g0050 Nicotiana tabacum HOM05D001465 ORTHO05D001434 1.6e-09 68.9 119 39.5
Nitab4.5_0005164g0010 Nicotiana tabacum HOM05D001465 ORTHO05D001434 1.6e-09 68.9 119 39.5
Solyc02g038790.3 Solanum lycopersicum HOM05D010460 ORTHO05D014683 2.1e-09 68.6 83 53.0
CAN.G855.56 Capsicum annuum HOM05D001465 ORTHO05D001434 3.6e-09 67.8 119 39.5
Solyc01g102990.3 Solanum lycopersicum HOM05D001465 ORTHO05D001434 3.6e-09 67.8 119 39.5
Sopen01g045400 Solanum pennellii HOM05D001465 ORTHO05D001434 3.6e-09 67.8 119 39.5
PGSC0003DMG400025169 Solanum tuberosum HOM05D011612 ORTHO05D013629 3.6e-09 67.8 56 55.4
Peaxi162Scf00011g01923 Petunia axillaris HOM05D001465 ORTHO05D001434 4.7e-09 67.4 119 38.7
Sopen01g052770 Solanum pennellii HOM05D011612 ORTHO05D013629 1.4e-08 65.9 42 69.0
Sopen02g012290 Solanum pennellii HOM05D010460 ORTHO05D014683 1.8e-08 65.5 78 57.7
Actinidia01640 Actinidia chinensis HOM05D001465 ORTHO05D001434 6.7e-08 63.5 119 36.1
Solyc01g150172.1 Solanum lycopersicum HOM05D011612 ORTHO05D013629 6.7e-08 63.5 42 66.7
Hma1.2p1_0052F.1_g030030 Hydrangea macrophylla HOM05D001465 ORTHO05D001434 8.8e-08 63.2 119 35.3
Lsat_1_v5_gn_9_124900 Lactuca sativa HOM05D001465 ORTHO05D001434 8.8e-08 63.2 119 36.1
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.5e-07 62.4 119 34.5
Dinv29636 Davidia involucrata HOM05D001465 ORTHO05D001434 2.0e-07 62.0 119 35.3
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 2.6e-07 61.6 99 43.4
Oeu043606.1 Olea europaea HOM05D001465 ORTHO05D001434 4.4e-07 60.8 119 36.1
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 5.7e-07 60.5 119 35.3
Cc02_g23740 Coffea canephora HOM05D001465 ORTHO05D001434 7.4e-07 60.1 41 70.7
Lalb_Chr06g0168791 Lupinus albus HOM05D001465 ORTHO05D001434 7.4e-07 60.1 119 33.6
CSS0046889 Camellia sinensis var. sinensis HOM05D001465 ORTHO05D001434 1.3e-06 59.3 41 70.7
MELO3C022924.2 Cucumis melo HOM05D001465 ORTHO05D001434 1.3e-06 59.3 119 35.3
vmacro19826 Vaccinium macrocarpon HOM05D001465 ORTHO05D001434 1.7e-06 58.9 38 78.9
Cfa004685 Carpinus fangiana HOM05D001465 ORTHO05D001434 2.2e-06 58.5 119 35.3
ECA233G2018 Erigeron canadensis HOM05D001465 ORTHO05D001434 2.2e-06 58.5 164 28.0
Actinidia01530 Actinidia chinensis HOM05D001465 ORTHO05D001434 2.8e-06 58.2 119 34.5
Nitab4.5_0004254g0010 Nicotiana tabacum HOM05D002848 ORTHO05D030274 2.8e-06 58.2 56 51.8
Potri.012G015600 Populus trichocarpa HOM05D001465 ORTHO05D001434 2.8e-06 58.2 119 34.5
Solyc02g084170.2 Solanum lycopersicum HOM05D003404 ORTHO05D392787 2.8e-06 58.2 37 83.8
Aa31LG3G9510 Aethionema arabicum HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
AL8G28060 Arabidopsis lyrata HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
AT5G53350 Arabidopsis thaliana HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
arahy.Tifrunner.gnm1.ann1.CZ2WKN Arachis hypogaea HOM05D001465 ORTHO05D001434 3.7e-06 57.8 164 28.0
arahy.Tifrunner.gnm1.ann1.GYTR0L Arachis hypogaea HOM05D001465 ORTHO05D001434 3.7e-06 57.8 164 28.0
EL10Ac6g13983 Beta vulgaris HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BcaB08g35698 Brassica carinata HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BcaC01g06247 Brassica carinata HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BcaC04g20463 Brassica carinata HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BcaNung06631 Brassica carinata HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
A03p15180 Brassica napus HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
A10p10860 Brassica napus HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
C03p17710 Brassica napus HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
C09p43200 Brassica napus HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BolC3t14181H Brassica oleracea HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BolC9t57193H Brassica oleracea HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BraA03t10812Z Brassica rapa HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
BraA10t43171Z Brassica rapa HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
Carub.0008s1353 Capsella rubella HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
CARHR266480 Cardamine hirsuta HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
AUR62032473 Chenopodium quinoa HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
CsaV3_5G027440 Cucumis sativus L. HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 34.5
Thhalv10013106m.g Eutrema salsugineum HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
PSO063G7118 Papaver somniferum HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 34.5
PSO170G5192 Papaver somniferum HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 34.5
Sp6g15500 Schrenkiella parvula HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
THA.LOC104825145 Tarenaya hassleriana HOM05D001465 ORTHO05D001434 3.7e-06 57.8 119 35.3
GSVIVG01037101001 Vitis vinifera HOM05D001465 ORTHO05D001434 3.7e-06 57.8 121 33.9
Aa31LG9G11720 Aethionema arabicum HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 33.6
CSS0022690 Camellia sinensis var. sinensis HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
Ciclev10019167m.g Citrus clementina HOM05D001465 ORTHO05D001434 4.8e-06 57.4 118 34.7
Ciclev10019480m.g Citrus clementina HOM05D001465 ORTHO05D001434 4.8e-06 57.4 121 33.9
Cc02_g01550 Coffea canephora HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
FAN04G1548 Fragaria x ananassa HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 33.6
Glyma.04G235600 Glycine max HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 33.6
HanXRQChr07g0206491 Helianthus annuus HOM05D001465 ORTHO05D001434 4.8e-06 57.4 164 27.4
Medtr3g091550 Medicago truncatula HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
Nn1g00251 Nelumbo nucifera HOM05D001465 ORTHO05D001434 4.8e-06 57.4 121 33.1
Phvul.009G052400 Phaseolus vulgaris HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
Prupe.1G585800 Prunus persica HOM05D001465 ORTHO05D001434 4.8e-06 57.4 121 33.1
QL02p103485 Quercus lobata HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 35.3
SGA_v2.0_scaffold13G06532 Striga asiatica HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
vmacro22636 Vaccinium macrocarpon HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
HPP92_009195 Vanilla planifolia HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
VMungo1309G2445 Vigna mungo HOM05D001465 ORTHO05D001434 4.8e-06 57.4 119 34.5
Zm00001eb244240 Zea mays HOM05D001465 ORTHO05D001434 4.8e-06 57.4 164 28.0
Actinidia08650 Actinidia chinensis HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.1
Actinidia34222 Actinidia chinensis HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Aqoxy7G00077 Aquilegia oxysepala HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
CANSAT43G0002 Cannabis sativa HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
CDE02G4148 Ceratophyllum demersum HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Ca_16708_v3 Cicer arietinum L. HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
ClCG08G001900 Citrullus lanatus HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.1
Dinv22082 Davidia involucrata HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Duzib187G1494 Durio zibethinus HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
ECA232G1840 Erigeron canadensis HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
FAN13G0884 Fragaria x ananassa HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Glyma.06G129100 Glycine max HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
HanXRQChr03g0071701 Helianthus annuus HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.1
Lsat_1_v5_gn_2_136101 Lactuca sativa HOM05D001465 ORTHO05D001434 6.3e-06 57.0 164 27.4
Lsat_1_v5_gn_4_132220 Lactuca sativa HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Lj1C1018T3 Lonicera japonica HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Lj1C1020T6 Lonicera japonica HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Lj1g0007622 Lotus japonicus HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Lalb_Chr08g0240231 Lupinus albus HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Medtr6g059910 Medicago truncatula HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Psat5g077080 Pisum sativum HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Potri.015G012900 Populus trichocarpa HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 34.5
Prupe.8G000600 Prunus persica HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
PGR102G1432 Punica granatum HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
PGR142G0151 Punica granatum HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.9
Rhsim03G0208900 Rhododendron simsii HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
SalBow7G2489 Salvia bowleyana HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
Sed0007092 Sechium edule HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.1
SGA_v2.0_scaffold44G16804 Striga asiatica HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.9
THA.LOC104799975 Tarenaya hassleriana HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 35.3
Thecc.08G166900 Theobroma cacao HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
TPR.G19382 Trifolium pratense HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
TWI23G1277 Tripterygium wilfordii HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 35.3
VMungo0720G3113 Vigna mungo HOM05D001465 ORTHO05D001434 6.3e-06 57.0 119 33.6
GSVIVG01038550001 Vitis vinifera HOM05D001465 ORTHO05D001434 6.3e-06 57.0 121 33.9
AagrBONN_evm.TU.Sc2ySwM_340.251 Anthoceros agrestis HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
EL10Ac3g05284 Beta vulgaris HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
CAN.G481.6 Capsicum annuum HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
AUR62006090 Chenopodium quinoa HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
AUR62019403 Chenopodium quinoa HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
Dinv29278 Davidia involucrata HOM05D001465 ORTHO05D001434 8.2e-06 56.6 122 32.8
Migut.C01412 Erythranthe guttata HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 32.8
FAN19G1444 Fragaria x ananassa HOM05D001465 ORTHO05D001434 8.2e-06 56.6 151 27.8
Lj5g0020204 Lotus japonicus HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 32.8
Lalb_Chr02g0149861 Lupinus albus HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 32.8
Manes.17G016400 Manihot esculenta HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 33.6
Mapoly0002s0296 Marchantia polymorpha HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
Sabra12G0016500 Salix brachista HOM05D001465 ORTHO05D000577 8.2e-06 56.6 119 33.6
Sabra15G0010500 Salix brachista HOM05D001465 ORTHO05D001434 8.2e-06 56.6 123 34.1
Solyc03g083250.3 Solanum lycopersicum HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
Sopen03g023000 Solanum pennellii HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5
PGSC0003DMG400009130 Solanum tuberosum HOM05D001465 ORTHO05D001434 8.2e-06 56.6 119 34.5


User provided reference genes

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