Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 0.0e+00 1139.8 600 100.0
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 0.0e+00 1102.4 600 93.8
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 7.2e-275 950.3 600 81.5
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 1.8e-273 945.7 502 94.8
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 6.8e-265 917.1 598 78.3
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.8e-257 892.5 528 84.8
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 5.8e-248 860.9 635 72.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 2.3e-196 689.5 563 61.8
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 5.3e-193 678.3 578 62.6
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.3e-186 657.1 579 59.9
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-186 656.8 579 59.8
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 5.3e-185 651.7 578 58.1
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.0e-184 649.8 578 59.2
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 1.3e-183 647.1 617 57.4
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 7.2e-182 641.3 578 59.7
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 3.6e-181 639.0 578 59.2
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.1e-179 634.0 575 57.7
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 2.8e-178 629.4 563 57.2
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 2.9e-175 619.4 610 56.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 3.8e-175 619.0 570 56.8
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 6.5e-175 618.2 590 56.1
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 8.5e-175 617.8 571 55.9
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 2.5e-174 616.3 567 56.6
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 4.2e-174 615.5 611 54.3
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.1e-173 613.2 576 55.7
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 8.0e-173 611.3 581 56.8
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.0e-172 609.4 631 52.3
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.4e-169 600.5 546 57.1
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 1.3e-167 594.0 564 57.3
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 1.3e-167 594.0 522 58.4
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 5.5e-166 588.6 574 54.9
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 1.2e-165 587.4 611 53.2
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 4.7e-165 585.5 570 54.6
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 4.4e-163 578.9 578 54.5
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.7e-163 578.6 578 53.6
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 1.3e-162 577.4 577 53.0
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.3e-162 577.4 582 53.3
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 4.8e-162 575.5 578 53.5
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 4.1e-161 572.4 614 52.0
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 9.1e-161 571.2 573 53.8
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 1.0e-159 567.8 577 53.6
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 1.3e-159 567.4 599 52.8
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 8.5e-159 564.7 567 54.3
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.9e-158 563.5 595 52.3
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 9.4e-158 561.2 569 53.3
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 9.4e-158 561.2 580 53.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.2e-157 560.8 571 52.9
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 5.2e-156 555.4 568 51.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 8.8e-156 554.7 579 52.8
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 2.6e-155 553.1 583 51.8
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 4.4e-155 552.4 564 52.8
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 5.7e-155 552.0 597 51.3
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.3e-154 550.8 562 53.6
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.8e-154 549.7 556 56.3
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 3.7e-154 549.3 556 52.2
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.1e-153 547.7 604 50.3
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.8e-153 547.0 571 52.4
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 4.1e-153 545.8 569 53.3
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 4.5e-152 542.3 545 54.3
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.3e-151 540.8 582 50.7
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 5.0e-151 538.9 553 54.1
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 8.6e-151 538.1 569 52.4
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.9e-150 537.0 599 50.9
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 3.3e-150 536.2 571 51.8
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 7.2e-150 535.0 571 50.3
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 7.2e-150 535.0 567 52.7
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 9.5e-150 534.6 626 47.8
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 1.6e-149 533.9 565 52.7
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.6e-149 533.9 553 52.8
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 2.1e-149 533.5 545 53.4
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 8.0e-149 531.6 552 52.5
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 2.6e-147 526.6 571 51.1
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 4.4e-147 525.8 491 57.2
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 9.8e-147 524.6 571 51.8
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 1.3e-146 524.2 572 49.1
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 9.2e-145 518.1 482 57.9
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 3.9e-143 512.7 563 50.8
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 3.9e-143 512.7 538 51.7
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 5.0e-143 512.3 581 50.3
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 7.3e-142 508.4 580 50.2
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.0e-140 504.6 556 51.3
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 4.0e-140 502.7 623 46.9
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 8.9e-140 501.5 569 49.4
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 8.9e-140 501.5 570 49.6
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 1.2e-139 501.1 547 50.6
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 7.5e-139 498.4 568 50.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 3.7e-138 496.1 563 49.7
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 4.9e-138 495.7 508 53.0
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 1.1e-137 494.6 577 48.4
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 7.0e-137 491.9 540 50.4
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 6.0e-136 488.8 547 50.5
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.0e-135 486.5 422 57.8
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 8.3e-130 468.4 584 46.1
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.1e-126 458.0 598 45.2
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 4.9e-122 442.6 527 47.2
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 8.9e-116 421.8 485 47.8
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 8.7e-103 378.6 399 52.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 4.2e-89 333.2 451 45.2
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 5.7e-86 322.8 522 36.8
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 8.2e-85 318.9 566 37.3
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.0e-83 314.3 517 37.1
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.0e-82 312.0 479 39.0
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.9e-65 254.6 293 51.5
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 5.9e-59 233.0 189 63.5
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.5e-57 228.4 317 41.3
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 6.7e-55 219.5 201 55.7
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 3.8e-42 177.2 516 29.5
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 8.0e-32 142.9 500 27.8
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 5.9e-27 126.7 369 30.1
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.8e-27 126.3 68 92.6
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.7e-26 125.2 579 24.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 2.9e-26 124.4 123 49.6
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-17 93.6 88 53.4
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-17 93.6 88 53.4
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.3e-17 93.2 88 53.4
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.3e-17 93.2 88 53.4
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.1e-12 79.3 116 37.1
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 2.7e-11 74.7 193 32.6
CAN.G1274.30 Capsicum annuum HOM05D006562 ORTHO05D008230 6.6e-10 70.1 74 55.4
unitig_699.g19732 Utricularia gibba HOM05D004977 ORTHO05D006454 5.6e-09 67.0 357 23.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 9.5e-09 66.2 85 47.1
Migut.D02372 Erythranthe guttata HOM05D004977 ORTHO05D006454 1.6e-08 65.5 333 21.9
Oeu058189.1 Olea europaea HOM05D004977 ORTHO05D006454 8.1e-08 63.2 333 20.7
Migut.D02375 Erythranthe guttata HOM05D004977 ORTHO05D006454 2.3e-07 61.6 327 21.1
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 2.3e-07 61.6 341 20.8
CSS0043529 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 6.8e-07 60.1 258 22.5
CSS0038151 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 2.0e-06 58.5 258 22.5
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 2.6e-06 58.2 241 23.7
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 2.6e-06 58.2 305 22.0
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 2.6e-06 58.2 305 22.0
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 3.4e-06 57.8 305 22.6
MSTRG.21010 Avicennia marina HOM05D004977 ORTHO05D006454 4.4e-06 57.4 333 21.9
Cre06.g251800 Chlamydomonas reinhardtii HOM05D001470 ORTHO05D006430 9.9e-06 56.2 245 26.1


User provided reference genes

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