Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027550 Solanum pennellii HOM05D004017 ORTHO05D004612 5.1e-125 451.1 224 100.0
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 5.4e-58 228.4 160 76.9
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 7.1e-58 228.0 160 76.9
Sopen02g028020 Solanum pennellii HOM05D004017 ORTHO05D004612 4.4e-52 208.8 169 70.4
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 2.9e-51 206.1 159 71.1
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.1e-49 199.9 164 68.3
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.5e-49 199.1 164 68.3
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 5.1e-40 168.7 166 56.0
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 1.3e-38 164.1 163 57.7
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.6e-38 163.7 158 55.7
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 2.8e-38 162.9 160 60.6
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 3.1e-37 159.5 201 48.3
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 2.0e-36 156.8 163 50.9
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 2.6e-36 156.4 164 54.3
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.6e-36 156.4 163 54.0
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 3.4e-36 156.0 163 53.4
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 5.8e-36 155.2 167 53.9
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 1.7e-35 153.7 159 53.5
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 2.2e-35 153.3 163 54.6
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 6.4e-35 151.8 162 54.3
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.1e-34 151.0 163 52.1
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 3.2e-34 149.4 168 51.2
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 7.1e-34 148.3 164 52.4
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 7.1e-34 148.3 163 50.3
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 2.1e-33 146.7 156 55.8
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 2.7e-33 146.4 163 49.1
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 2.7e-33 146.4 156 52.6
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 3.5e-33 146.0 173 45.7
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 3.5e-33 146.0 156 53.2
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 4.6e-33 145.6 156 53.2
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 4.6e-33 145.6 156 54.5
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 6.0e-33 145.2 163 52.1
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 6.0e-33 145.2 171 46.8
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 7.9e-33 144.8 163 50.9
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 7.9e-33 144.8 163 52.8
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.3e-32 144.1 156 52.6
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 1.3e-32 144.1 162 51.9
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 1.8e-32 143.7 164 47.6
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 1.8e-32 143.7 164 47.6
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.8e-32 143.7 155 55.5
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 1.8e-32 143.7 155 54.2
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 1.8e-32 143.7 156 53.2
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.8e-32 143.7 178 44.9
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.3e-32 143.3 156 53.2
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 3.0e-32 142.9 157 52.9
Glyma.11G086300 Glycine max HOM05D004017 ORTHO05D004612 3.0e-32 142.9 163 49.1
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 3.9e-32 142.5 157 52.2
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.9e-32 142.5 156 52.6
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 6.7e-32 141.7 159 54.1
Lalb_Chr16g0380071 Lupinus albus HOM05D004017 ORTHO05D004612 8.7e-32 141.4 164 47.0
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 3.3e-31 139.4 198 42.9
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 4.3e-31 139.0 164 48.8
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 5.6e-31 138.7 195 43.1
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 1.3e-30 137.5 160 45.6
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 1.3e-30 137.5 162 47.5
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 1.3e-30 137.5 163 46.6
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.6e-30 137.1 159 46.5
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 2.8e-30 136.3 159 46.5
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 6.2e-30 135.2 156 52.6
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 1.1e-29 134.4 163 47.2
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.9e-29 131.7 152 52.6
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 2.0e-28 130.2 178 45.5
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 4.5e-28 129.0 165 47.3
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.3e-27 127.5 192 42.7
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 1.7e-27 127.1 159 44.7
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 3.8e-27 125.9 156 46.2
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 3.8e-27 125.9 163 45.4
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 8.4e-27 124.8 156 45.5
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 1.1e-26 124.4 156 46.8
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 1.4e-26 124.0 171 46.2
SalBow6G5056 Salvia bowleyana HOM05D004017 ORTHO05D004612 4.2e-26 122.5 166 45.8
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 7.1e-26 121.7 157 45.2
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.2e-25 120.9 168 41.1
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 1.6e-25 120.6 159 47.2
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 1.6e-25 120.6 152 44.7
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 2.7e-25 119.8 154 42.9
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.5e-25 119.4 156 45.5
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 3.5e-25 119.4 156 45.5
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 6.0e-25 118.6 154 47.4
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 7.9e-25 118.2 159 44.7
Carub.0007s0481 Capsella rubella HOM05D004017 ORTHO05D004612 5.1e-24 115.5 163 42.9
Sopen02g033630 Solanum pennellii HOM05D000936 ORTHO05D015151 4.3e-23 112.5 161 49.1
Sopen02g027270 Solanum pennellii HOM05D004017 ORTHO05D004612 1.6e-22 110.5 66 89.4
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 3.7e-22 109.4 159 44.7
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 4.8e-22 109.0 154 44.2
Sopen02g027130 Solanum pennellii HOM05D004017 ORTHO05D004612 8.2e-22 108.2 83 69.9
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 1.2e-20 104.4 203 37.9
Zm00001eb215200 Zea mays HOM05D004017 ORTHO05D004612 5.9e-20 102.1 135 40.7
MD15G1230500 Malus domestica HOM05D004017 ORTHO05D004612 1.3e-19 100.9 122 49.2
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 9.3e-18 94.7 130 44.6
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 1.2e-17 94.4 152 42.8
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 2.1e-17 93.6 130 43.1
Sopen02g037880 Solanum pennellii HOM05D004017 ORTHO05D004612 7.9e-17 91.7 87 64.4
Sopen02g033740 Solanum pennellii HOM05D004017 ORTHO05D015151 2.3e-16 90.1 73 67.1
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.6e-14 84.0 209 30.6
Atru.chr3.128 Acer truncatum HOM05D004017 ORTHO05D004612 2.8e-14 83.2 62 61.3
Ah.03g142850 Amaranthus hybridus HOM05D004017 ORTHO05D004612 2.4e-13 80.1 73 53.4
Sopen02g037100 Solanum pennellii HOM05D004017 ORTHO05D037621 5.3e-13 79.0 62 64.5
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 6.9e-13 78.6 152 37.5
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 9.0e-13 78.2 166 28.9
Sopen01g045030 Solanum pennellii HOM05D004017 ORTHO05D004612 9.0e-13 78.2 119 46.2
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.3e-11 74.3 71 52.1
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.0e-11 72.4 201 25.9
Solyc02g091620.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 6.5e-11 72.0 65 55.4
Solyc02g090045.1 Solanum lycopersicum HOM05D004017 ORTHO05D004612 1.1e-10 71.2 47 76.6
Solyc02g084250.4 Solanum lycopersicum HOM05D027859 ORTHO05D004612 1.4e-10 70.9 65 58.5
Solyc02g086415.1 Solanum lycopersicum HOM05D004017 ORTHO05D392231 3.2e-10 69.7 36 80.6
arahy.Tifrunner.gnm1.ann1.6PZ0D3 Arachis hypogaea HOM05D004017 ORTHO05D004612 9.4e-10 68.2 111 36.9
Solyc01g102630.4 Solanum lycopersicum HOM05D004017 ORTHO05D004612 9.4e-10 68.2 68 58.8
Solyc02g086410.3 Solanum lycopersicum HOM05D011612 ORTHO05D391266 2.7e-09 66.6 40 82.5
Solyc02g091630.1 Solanum lycopersicum HOM05D015792 ORTHO05D019371 4.6e-09 65.9 41 75.6
Solyc01g150175.1 Solanum lycopersicum HOM05D004017 ORTHO05D004612 1.0e-08 64.7 42 78.6
Pp3c13_10410 Physcomitrium patens HOM05D004017 ORTHO05D004612 1.1e-07 61.2 160 25.6
PGSC0003DMG400023778 Solanum tuberosum HOM05D004017 ORTHO05D004612 1.1e-07 61.2 46 73.9
Sopen02g031130 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-06 57.8 42 73.8
Sopen02g031120 Solanum pennellii HOM05D011612 ORTHO05D013629 4.8e-06 55.8 45 64.4


User provided reference genes

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