Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.8e-191 671.8 338 100.0
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.2e-189 666.4 338 99.1
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.9e-188 661.8 338 97.9
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.0e-169 600.1 338 87.6
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.7e-169 597.4 338 87.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.3e-156 556.6 338 82.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.8e-137 491.1 338 71.6
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.5e-136 487.6 339 70.5
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.7e-135 486.5 340 70.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.7e-135 486.5 340 70.9
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.2e-133 480.3 331 69.5
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 7.7e-133 477.6 341 71.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 4.7e-130 468.4 339 70.2
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.0e-129 467.2 341 68.6
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.3e-129 466.1 332 69.9
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 3.0e-129 465.7 334 69.5
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 8.8e-129 464.2 341 67.4
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.3e-127 460.3 339 68.4
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 3.7e-127 458.8 340 67.4
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.1e-126 457.2 318 71.1
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 7.0e-126 454.5 315 70.5
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 9.2e-126 454.1 333 66.4
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 9.2e-126 454.1 331 68.3
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.7e-124 449.9 337 68.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.3e-124 449.5 337 65.9
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.3e-124 449.5 340 65.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.1e-123 447.2 326 67.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.5e-123 446.8 339 65.8
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.5e-123 446.0 334 67.1
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 5.6e-123 444.9 339 66.1
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 7.3e-123 444.5 334 67.1
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.2e-122 443.7 332 66.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.1e-122 443.0 326 68.1
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 8.0e-122 441.0 328 65.5
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.4e-121 440.3 345 63.8
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.0e-121 438.7 344 63.1
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.4e-120 435.6 323 65.6
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 7.5e-120 434.5 337 65.3
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.5e-120 434.5 328 64.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 9.8e-120 434.1 321 67.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 3.7e-119 432.2 319 66.8
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.2e-118 429.1 339 63.4
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 7.0e-118 427.9 338 64.2
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 9.2e-118 427.6 340 62.6
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.6e-117 426.8 328 64.6
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.7e-117 426.0 342 62.0
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.7e-117 426.0 341 62.5
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 341 62.2
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 341 62.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 4.6e-117 425.2 345 61.2
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 4.6e-117 425.2 341 63.6
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.9e-117 424.9 341 61.9
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 5.9e-117 424.9 340 61.5
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 7.8e-117 424.5 346 60.1
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.0e-116 424.1 342 61.7
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.3e-116 423.7 346 62.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.3e-116 423.7 328 63.1
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.7e-116 423.3 331 64.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.3e-116 422.9 342 61.7
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 2.3e-116 422.9 345 61.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.0e-116 422.5 341 61.6
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.9e-116 422.2 326 63.8
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 5.0e-116 421.8 340 62.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.0e-116 421.8 329 62.0
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 6.6e-116 421.4 345 61.4
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 6.6e-116 421.4 337 62.3
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 8.6e-116 421.0 345 61.2
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 8.6e-116 421.0 333 66.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 8.6e-116 421.0 331 63.7
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.1e-115 420.6 347 61.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.1e-115 420.6 329 61.7
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.1e-115 420.6 329 61.7
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-115 420.2 331 62.8
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-115 420.2 342 61.7
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.9e-115 419.9 329 63.2
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.6e-115 418.3 331 63.1
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 7.3e-115 417.9 331 62.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 7.3e-115 417.9 345 62.0
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 9.5e-115 417.5 345 62.0
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 9.5e-115 417.5 342 62.3
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-114 416.8 340 60.6
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.1e-114 416.4 329 62.0
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.1e-114 416.4 339 61.9
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 2.8e-114 416.0 334 61.4
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.8e-113 413.3 331 61.6
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.3e-113 412.9 328 61.9
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 4.0e-113 412.1 316 63.6
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.2e-112 410.6 343 61.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-112 409.8 371 57.1
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 7.5e-112 407.9 316 63.6
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.2e-111 406.4 323 63.2
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.9e-111 405.2 328 61.9
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 6.4e-111 404.8 345 58.8
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 6.4e-111 404.8 321 62.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.9e-110 403.3 327 61.8
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.4e-110 402.9 335 62.1
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 5.4e-110 401.7 260 73.5
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 1.0e-108 397.5 322 64.6
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.3e-108 396.4 323 61.3
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 8.6e-108 394.4 318 59.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.2e-106 390.6 315 59.0
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 8.1e-106 387.9 331 59.8
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 8.9e-105 384.4 326 59.2
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.0e-104 383.3 329 59.3
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 4.4e-104 382.1 333 58.3
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.2e-101 374.0 318 58.8
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 4.6e-101 372.1 316 58.9
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 8.6e-100 367.9 341 55.4
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 3.1e-97 359.4 286 62.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.1e-92 342.0 252 65.1
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.0e-84 317.8 324 49.4
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.0e-84 317.8 330 49.7
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 3.6e-82 309.3 343 44.6
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.1e-70 271.2 348 40.2
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 3.0e-60 236.5 176 65.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 3.0e-60 236.5 223 54.3
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.9e-59 233.8 247 50.6
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 9.7e-59 231.5 176 64.2
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.8e-58 229.9 172 64.0
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 1.4e-57 227.6 178 64.6
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 4.1e-57 226.1 316 40.5
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.9e-51 207.2 144 68.8
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.2e-48 198.0 324 34.9
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 8.8e-44 181.8 144 63.9
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 6.3e-42 175.6 136 65.4
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.3e-35 153.3 180 49.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.4e-35 152.9 121 60.3
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.3e-34 151.4 121 58.7
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 3.1e-33 146.7 118 60.2
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 4.1e-33 146.4 107 69.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.3e-33 146.0 211 40.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.0e-33 145.6 99 71.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 2.0e-32 144.1 165 50.3
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 5.9e-32 142.5 295 30.5
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-31 140.2 98 68.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 5.0e-31 139.4 98 68.4
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 5.0e-31 139.4 98 68.4
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 2.5e-30 137.1 340 27.9
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.6e-29 134.4 171 42.1
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.2e-28 129.4 164 40.9
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 4.4e-27 126.3 99 57.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-24 117.5 84 67.9
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-24 117.5 84 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 4.5e-24 116.3 176 35.8
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.8e-23 113.2 134 47.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.2e-22 109.0 120 50.8
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.8e-20 104.4 132 47.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 5.7e-19 99.4 113 44.2
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.0e-15 88.6 99 47.5
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.3e-15 87.4 124 44.4
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 1.4e-12 78.2 68 60.3
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-11 75.1 59 55.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.8e-11 72.0 47 76.6
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-08 65.1 58 60.3
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.7e-07 61.2 134 33.6


User provided reference genes

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